Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000213-TA|BGIBMGA000213-PA|IPR009318|Trehalose receptor
         (92 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        25   1.4  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    23   5.5  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    23   9.5  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    23   9.5  
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    23   9.5  

>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 8/28 (28%), Positives = 20/28 (71%)

Query: 47  FNVTRGMILRVIGTIVTYELVLIQLTKK 74
           +N+T  M+  ++G IV+Y ++L++  ++
Sbjct: 352 YNLTNFMVFLLLGAIVSYGIMLVRRDRR 379


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 14  LALYEVPTADYSLDVQRFQLQLRYTTVGLSGVCFNVTRGMI 54
           L+L  +  ADY + V   +L   +T    + V   VTR ++
Sbjct: 633 LSLSVIEDADYQICVSSLRLLREFTRFAATDVWAYVTRSLV 673


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 4   NVHSCAQVPQLALYEVPTADYSLDVQRFQLQLRYTTV 40
           N+H   Q  Q  L +  +  YS   +   LQ+RY T+
Sbjct: 263 NIHKNFQKIQSELIQTNSGLYSTKKELSALQVRYATL 299


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 13/35 (37%), Positives = 15/35 (42%)

Query: 48  NVTRGMILRVIGTIVTYELVLIQLTKKNLDNDTSI 82
           NVT G  L   G     +L   Q T K LD D  +
Sbjct: 951 NVTGGATLHEYGNTFIRQLEYSQCTFKLLDGDKEV 985


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 143

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 13/36 (36%), Positives = 14/36 (38%)

Query: 21 TADYSLDVQRFQLQLRYTTVGLSGVCFNVTRGMILR 56
          T  Y  DV R     R  T GL G       G +LR
Sbjct: 56 TVVYQKDVPRSSDGSRSMTAGLGGFMVGALAGSVLR 91


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.325    0.139    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 402,742
Number of Sequences: 5004
Number of extensions: 12891
Number of successful extensions: 35
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 5
length of query: 92
length of database: 2,362,478
effective HSP length: 62
effective length of query: 30
effective length of database: 2,052,230
effective search space: 61566900
effective search space used: 61566900
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 46 (22.6 bits)