Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000213-TA|BGIBMGA000213-PA|IPR009318|Trehalose receptor
         (92 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40718| Best HMM Match : Trehalose_recp (HMM E-Value=0.49)           30   0.23 
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   0.91 
SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23)           28   1.2  
SB_20992| Best HMM Match : ABC_tran (HMM E-Value=1.3e-36)              27   1.6  
SB_26155| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   3.7  
SB_54416| Best HMM Match : rve (HMM E-Value=1.4e-27)                   26   3.7  
SB_14894| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.4  
SB_36998| Best HMM Match : TUDOR (HMM E-Value=0)                       25   6.4  

>SB_40718| Best HMM Match : Trehalose_recp (HMM E-Value=0.49)
          Length = 269

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 12/22 (54%), Positives = 17/22 (77%)

Query: 49  VTRGMILRVIGTIVTYELVLIQ 70
           +TRGM+L V GTI+ Y  +L+Q
Sbjct: 246 ITRGMLLTVFGTILGYLTILVQ 267


>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1315

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 4  NVHSCAQVPQLALYEVPTADYSLDVQRFQLQ---LRYTTVGLSGVCFNVTRGMILRV 57
          + +SC    + + Y+VP     +++    L    LRY   GLSG CF   R   L V
Sbjct: 9  STNSCKFTWKFSTYKVPNMMSLVNIDGQSLSSADLRYNLYGLSGCCFLQPRARFLPV 65


>SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23)
          Length = 1592

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 19/65 (29%), Positives = 29/65 (44%)

Query: 9   AQVPQLALYEVPTADYSLDVQRFQLQLRYTTVGLSGVCFNVTRGMILRVIGTIVTYELVL 68
           +QV    +  V  + Y+  V R     RY   GLS  C   TR M+  V   + TY ++ 
Sbjct: 711 SQVRTYWVISVLCSKYAPHVARMVQHHRYAPTGLSVYCTPNTRLMLSMVKSQVRTYWVIS 770

Query: 69  IQLTK 73
           +  +K
Sbjct: 771 VPYSK 775


>SB_20992| Best HMM Match : ABC_tran (HMM E-Value=1.3e-36)
          Length = 641

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 25 SLDVQRFQLQLRYTTVGLSGVCFNVTRGMILRVIGTI 61
          S D Q+F  ++   T  L G+ F+V  G +L VIG +
Sbjct: 22 SADAQKFDWEIAIPT--LDGLSFDVPSGCLLGVIGAV 56


>SB_26155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 815

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/37 (27%), Positives = 23/37 (62%)

Query: 53  MILRVIGTIVTYELVLIQLTKKNLDNDTSIRDYYLPK 89
           M   ++ T++T+ +  +   +++L+N  S++ YYL K
Sbjct: 597 MFTSLMPTVLTFPMEKLVFIREHLNNWYSLKSYYLAK 633


>SB_54416| Best HMM Match : rve (HMM E-Value=1.4e-27)
          Length = 1068

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 5   VHSCAQVPQLALYEVPTADYSLDVQRFQLQLRYTT 39
           +H   Q+  L LYE PTAD   D  RF ++L +++
Sbjct: 813 LHYMTQIV-LMLYEDPTADLQSD-NRFHIELHFSS 845


>SB_14894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1052

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/49 (24%), Positives = 24/49 (48%)

Query: 19  VPTADYSLDVQRFQLQLRYTTVGLSGVCFNVTRGMILRVIGTIVTYELV 67
           VPT    L+V     ++  T   LS   FN +  ++L ++G ++   ++
Sbjct: 561 VPTKKSKLNVNTSSSEVSPTVAELSSSSFNPSSRVVLAMMGVVLVIAII 609


>SB_36998| Best HMM Match : TUDOR (HMM E-Value=0)
          Length = 2538

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/50 (26%), Positives = 25/50 (50%)

Query: 43   SGVCFNVTRGMILRVIGTIVTYELVLIQLTKKNLDNDTSIRDYYLPKHLI 92
            S + F+ T  M ++ + +  T+E+ LI +       D  I+   +PKH +
Sbjct: 996  SDLVFDKTFDMQVKAVSSEGTFEVDLISMETHKSIRDQLIQSVTIPKHTL 1045


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.325    0.139    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,824,901
Number of Sequences: 59808
Number of extensions: 89244
Number of successful extensions: 189
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 181
Number of HSP's gapped (non-prelim): 10
length of query: 92
length of database: 16,821,457
effective HSP length: 69
effective length of query: 23
effective length of database: 12,694,705
effective search space: 291978215
effective search space used: 291978215
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 52 (25.0 bits)