Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000213-TA|BGIBMGA000213-PA|IPR009318|Trehalose receptor
         (92 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44635.1 68418.m05469 minichromosome maintenance family prote...    27   2.2  
At1g02813.1 68414.m00240 expressed protein contains Pfam profile...    26   3.8  
At3g62430.1 68416.m07013 F-box family protein contains F-box dom...    25   8.9  
At1g66180.1 68414.m07512 aspartyl protease family protein contai...    25   8.9  

>At5g44635.1 68418.m05469 minichromosome maintenance family protein
           / MCM family protein similar to SP|P97311 DNA
           replication licensing factor MCM6 {Mus musculus};
           contains Pfam profile PF00493: MCM2/3/5 family
          Length = 831

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 12  PQLALYEVPTADYSLDVQRFQLQLRYT--TVGLSGVCFNVTRGMILRVIGTIVTYELVLI 69
           P+L        D    ++  + Q +YT  T+ +S  C N  R  +LR       ++ V +
Sbjct: 146 PELLYGTFKCLDCGSVIKNVEQQFKYTQPTICVSPTCLNRARWALLRQESKFADWQRVRM 205

Query: 70  QLTKKNL 76
           Q T K +
Sbjct: 206 QETSKEI 212


>At1g02813.1 68414.m00240 expressed protein contains Pfam profile
           PF04398: Protein of unknown function, DUF538
          Length = 149

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 8/59 (13%)

Query: 21  TADYSLDVQRFQLQLRYTTVGLSGVCFNVTRGMILRVIGTIVTYELVLIQLTKKNLDND 79
           T  +S+D      +++Y  V +SG+   +TRG ++R+IG  V      I +++ + D D
Sbjct: 62  TCQFSID----SYKVKYKPV-ISGI---ITRGRVIRLIGVSVKVLFFWINISEVSRDGD 112


>At3g62430.1 68416.m07013 F-box family protein contains F-box
          domain Pfam:PF00646
          Length = 437

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 48 NVTRGMILRVIGTIVTYELVLIQLTKKNLDNDTSI 82
          N+  G+I RVI  + T E   ++ T KN  N  +I
Sbjct: 6  NLPDGVIYRVISLLSTKEATCLKYTSKNWLNLVTI 40


>At1g66180.1 68414.m07512 aspartyl protease family protein contains
           Pfam PF00026: Eukaryotic aspartyl protease profile;
           similar to CND41, chloroplast nucleoid DNA binding
           protein (GI:2541876) [Nicotiana tabacum]
          Length = 430

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 15  ALYEVPTADYSLDVQRFQLQLRYTTVGLSGVCFNVTRGMILRVIGTIV 62
           A Y+   A+    V R +L+  Y   G + +CF+    MI R+IG +V
Sbjct: 312 AAYDKVRAEIMTRVGR-RLKKGYVYGGTADMCFDGNVAMIPRLIGDLV 358


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.325    0.139    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,929,075
Number of Sequences: 28952
Number of extensions: 59095
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 131
Number of HSP's gapped (non-prelim): 4
length of query: 92
length of database: 12,070,560
effective HSP length: 69
effective length of query: 23
effective length of database: 10,072,872
effective search space: 231676056
effective search space used: 231676056
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 51 (24.6 bits)