GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000213-TA|BGIBMGA000213-PA|IPR009318|Trehalose receptor
         (92 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0326 - 8976913-8976963,8977453-8977521,8978247-8978438,897...    29   0.63 
12_01_0350 + 2682502-2682593,2684131-2684327,2684978-2685162,268...    26   3.4  
12_01_0348 - 2662510-2662565,2662634-2662943,2663573-2663734,266...    26   3.4  
05_02_0148 - 7085892-7086011,7086681-7087004,7088258-7088419,708...    26   3.4  
01_01_1139 - 9024609-9024708,9024832-9024910,9025083-9025252,902...    26   4.4  
06_03_0700 + 23650275-23650299,23650381-23652350                       25   5.9  
01_03_0034 + 11828889-11828897,11829465-11829484,11829697-118297...    25   7.8  

>02_02_0326 -
          8976913-8976963,8977453-8977521,8978247-8978438,
          8978597-8978764,8978902-8979513,8979765-8979815
          Length = 380

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 7  SCAQVPQLALYEVPTADYSLD-VQRFQLQLR 36
          SCA VP++AL E P +D  +D   RF   LR
Sbjct: 49 SCANVPEVALSEAPLSDMLVDSFGRFHNYLR 79


>12_01_0350 +
           2682502-2682593,2684131-2684327,2684978-2685162,
           2685253-2685453,2685834-2685995,2686421-2686741
          Length = 385

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 33  LQLRYTTVGLSGVCFNVTRGMILRVIGTI 61
           L L +   G  G+ F V  GMIL V+G I
Sbjct: 320 LSLGFLFFGKEGLNFQVVLGMILAVVGMI 348


>12_01_0348 -
           2662510-2662565,2662634-2662943,2663573-2663734,
           2664072-2664272,2664357-2664541,2665108-2665240
          Length = 348

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 33  LQLRYTTVGLSGVCFNVTRGMILRVIGTI 61
           L L +   G  G+ F V  GMIL V+G I
Sbjct: 268 LSLGFLFFGKEGLNFQVVLGMILAVVGMI 296


>05_02_0148 -
           7085892-7086011,7086681-7087004,7088258-7088419,
           7088866-7089066,7089148-7089332,7089459-7089588
          Length = 373

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 33  LQLRYTTVGLSGVCFNVTRGMILRVIGTI 61
           L L +   G  G+ F+V  GMIL VIG I
Sbjct: 267 LTLGFLFFGKEGLNFHVAIGMILAVIGMI 295


>01_01_1139 -
           9024609-9024708,9024832-9024910,9025083-9025252,
           9025339-9025451,9025518-9025586,9025867-9025944,
           9026022-9026084,9026590-9026670,9027166-9027222,
           9027352-9027705
          Length = 387

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 15/39 (38%), Positives = 20/39 (51%)

Query: 13  QLALYEVPTADYSLDVQRFQLQLRYTTVGLSGVCFNVTR 51
           QL  YEV    Y LDV R +L ++     +S V  N+ R
Sbjct: 203 QLFSYEVYKVTYPLDVLRLRLAVQSGHSTMSQVAMNMLR 241


>06_03_0700 + 23650275-23650299,23650381-23652350
          Length = 664

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 8   CAQVPQLALYEVPTADYSLDVQRFQLQLRYTTVGLSGVCFNVTR 51
           C  + +L L     +DY + V     QL+   + LSG C  VT+
Sbjct: 580 CTDLAELDLSNCMVSDYGVAVLASARQLKLRVLSLSG-CLKVTQ 622


>01_03_0034 +
          11828889-11828897,11829465-11829484,11829697-11829739,
          11831088-11831252,11832745-11832864,11834709-11834879
          Length = 175

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 32 QLQLRYTTVGLSGVCFNV 49
          QLQLR   +G+   CFNV
Sbjct: 52 QLQLRIRVIGIICACFNV 69


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.325    0.139    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,290,143
Number of Sequences: 37544
Number of extensions: 68752
Number of successful extensions: 128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 122
Number of HSP's gapped (non-prelim): 7
length of query: 92
length of database: 14,793,348
effective HSP length: 70
effective length of query: 22
effective length of database: 12,165,268
effective search space: 267635896
effective search space used: 267635896
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 52 (25.0 bits)