GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000213-TA|BGIBMGA000213-PA|IPR009318|Trehalose receptor
         (92 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        24   0.35 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   0.62 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   0.62 
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   1.4  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   2.5  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    20   5.8  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    19   7.6  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 23.8 bits (49), Expect = 0.35
 Identities = 8/37 (21%), Positives = 21/37 (56%)

Query: 49 VTRGMILRVIGTIVTYELVLIQLTKKNLDNDTSIRDY 85
          +T GM++ V+  +     +L+   +   DN+ ++R++
Sbjct: 7  ITEGMMIGVLLMLAPINALLLGFVQSTPDNNKTVREF 43


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 0.62
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 45  VCFNVTRGMILRVIGTIVTYELVLIQLTK 73
           VCFN+   +I   I  +V  +LVL++  K
Sbjct: 417 VCFNLMYWIIYLHISDVVADDLVLLEEAK 445


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 0.62
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 45  VCFNVTRGMILRVIGTIVTYELVLIQLTK 73
           VCFN+   +I   I  +V  +LVL++  K
Sbjct: 417 VCFNLMYWIIYLHISDVVADDLVLLEEAK 445


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 1.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 77  DNDTSIRDYYLPKH 90
           DN  SI+D + P+H
Sbjct: 164 DNSVSIKDPWFPRH 177


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 2.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 75  NLDNDTSIRDYYLPKHLI 92
           +L  DT IR Y +PK  +
Sbjct: 285 DLTTDTLIRKYIIPKEQV 302


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 19.8 bits (39), Expect = 5.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 71  LTKKNLDNDTSIRDYYL 87
           L  KN +ND  I+ Y +
Sbjct: 291 LNGKNFNNDDDIKSYLI 307


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 19.4 bits (38), Expect = 7.6
 Identities = 6/19 (31%), Positives = 11/19 (57%)

Query: 44  GVCFNVTRGMILRVIGTIV 62
           GV      GM+ + +GT++
Sbjct: 281 GVAIGTAAGMMCQPVGTLI 299


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.139    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,953
Number of Sequences: 429
Number of extensions: 765
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 92
length of database: 140,377
effective HSP length: 48
effective length of query: 44
effective length of database: 119,785
effective search space:  5270540
effective search space used:  5270540
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.7 bits)
S2: 38 (19.4 bits)