Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000212-TA|BGIBMGA000212-PA|IPR009041|Proteinase
inhibitor, PMP and SGCI
(118 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0534 + 4227838-4228001,4229034-4229151,4229593-4229752,422... 32 0.10
04_01_0014 - 231228-233179,233522-233714 28 1.7
08_01_0438 + 3852221-3853207,3853544-3854757,3855258-3855330,385... 28 2.2
06_02_0016 - 10623796-10625317,10626493-10627541 27 3.9
12_01_0442 + 3495333-3496484 27 5.2
07_03_1230 + 25044126-25044683 27 5.2
06_03_0615 - 22761375-22761760,22762218-22765026 27 5.2
04_04_0516 + 25833801-25834046,25834412-25834532,25834636-258348... 27 5.2
06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176 26 6.8
12_02_0441 + 19115990-19116478 26 9.0
07_01_0041 - 332393-333772 26 9.0
01_05_0127 - 18401461-18401464,18401868-18403876,18404060-184042... 26 9.0
>11_01_0534 +
4227838-4228001,4229034-4229151,4229593-4229752,
4229901-4230027,4230899-4231037,4231119-4231301,
4231395-4231464,4231550-4231662
Length = 357
Score = 32.3 bits (70), Expect = 0.10
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 58 PCLRCTVIKNPFFKCIPGEKYMDECDSCRCTDGHSGWCTNQYCEFRSLHLYAMKLSD 114
PC C + +P ++ P + + C + CT HSG N+ C + Y +K +D
Sbjct: 88 PCQSCNKVPHPLYR--PTKNKLVPCANSICTALHSGSSPNKKCTTQQQCDYQIKYTD 142
>04_01_0014 - 231228-233179,233522-233714
Length = 714
Score = 28.3 bits (60), Expect = 1.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 1 MKPKPPHQYWEEETSLTLVPENKNCLLCEAQDSG 34
M PP YW TS TL+PE ++ L + + G
Sbjct: 114 MLRNPPKVYWYGLTSPTLIPELRSLLAMDPRTRG 147
>08_01_0438 +
3852221-3853207,3853544-3854757,3855258-3855330,
3856715-3856843,3857060-3857103,3857186-3857265,
3857342-3857396,3857712-3857919
Length = 929
Score = 27.9 bits (59), Expect = 2.2
Identities = 14/62 (22%), Positives = 23/62 (37%)
Query: 11 EEETSLTLVPENKNCLLCEAQDSGACRSMPSCVYCEPTVTALCERSTPCLRCTVIKNPFF 70
E + T + + +C CE G R +Y EP + C+ C ++ F
Sbjct: 372 EMAAAATKILPDTHCTFCEKHILGTVREELGSLYPEPELDHFITDLRKCIDCCRLEESFE 431
Query: 71 KC 72
C
Sbjct: 432 SC 433
>06_02_0016 - 10623796-10625317,10626493-10627541
Length = 856
Score = 27.1 bits (57), Expect = 3.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 27 LCEAQDSGACRSMPSCVYCEPTVTAL 52
L A +G+CR +PS VY V AL
Sbjct: 133 LMAAYAAGSCRDLPSTVYVSTLVVAL 158
>12_01_0442 + 3495333-3496484
Length = 383
Score = 26.6 bits (56), Expect = 5.2
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 3 PKPPHQYWEEETSLTLVPENKNCLLCEAQDSGACRSMP 40
P PP EEE + CL C+A ++ RS P
Sbjct: 98 PPPPVDPGEEEAGKRAAKRARRCLNCDAVETPQWRSGP 135
>07_03_1230 + 25044126-25044683
Length = 185
Score = 26.6 bits (56), Expect = 5.2
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 7 HQYWEEETSLTLVPENKNCLLCEAQDSGACRSMPSCVYCEPTVTALC 53
H+ E E +LT + ++ C +C+ CR M +C C + C
Sbjct: 68 HERHEHELTLTRLTGSRWCNVCDVISHAGCR-MYACAPCNFSAHPRC 113
>06_03_0615 - 22761375-22761760,22762218-22765026
Length = 1064
Score = 26.6 bits (56), Expect = 5.2
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 68 PFFKCIPGEKYMDECDSCRCTDGHS 92
PFFK + Y++ + C DGH+
Sbjct: 668 PFFKTLSSSSYINNPNLCESYDGHT 692
>04_04_0516 +
25833801-25834046,25834412-25834532,25834636-25834821,
25834918-25834944,25836203-25836351,25836553-25836602,
25837181-25837289,25837395-25837532,25838184-25838463,
25838533-25838656,25838994-25839003
Length = 479
Score = 26.6 bits (56), Expect = 5.2
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 63 TVIKNPFFKCIPGEKYMDECDSCRCTDGHSGWCTNQYCEFRSLHLY 108
TV K+ + Y C+S C G+ + Y +F + H+Y
Sbjct: 167 TVFKDMMRQIDTLPSYTGGCNSVECLYSDQGFLNSYYADFANSHVY 212
>06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176
Length = 427
Score = 26.2 bits (55), Expect = 6.8
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 30 AQDSGACRSMPSCVYCEPTVTALC 53
A+ CR+ PS VYC LC
Sbjct: 64 ARPCDGCRAAPSVVYCRADAAYLC 87
>12_02_0441 + 19115990-19116478
Length = 162
Score = 25.8 bits (54), Expect = 9.0
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 29 EAQDSGACRSMPSCVYCEPTVTALCERSTPCLRCT 63
++ G C + PSC +C A+ + P CT
Sbjct: 4 QSSGGGHCSNPPSCGFCGRATVAISFAAVPAGFCT 38
>07_01_0041 - 332393-333772
Length = 459
Score = 25.8 bits (54), Expect = 9.0
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 3 PKPPHQYWEEETSLTLVPENKNCLLCEAQDSGACRSM 39
P PPH W + + L NK+ +L + R+M
Sbjct: 318 PPPPHGEWSDRLAYGLPKLNKSAVLVTCRKEEHARAM 354
>01_05_0127 -
18401461-18401464,18401868-18403876,18404060-18404237,
18404381-18404958,18405609-18405611
Length = 923
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 73 IPGEKYMDECDSCRCTDGHSGWCTNQYCE 101
IPG Y+D D DG G C+ YC+
Sbjct: 616 IPGFPYLDVIDKVFNNDGEDG-CSVPYCK 643
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.136 0.480
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,256,356
Number of Sequences: 37544
Number of extensions: 163800
Number of successful extensions: 314
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 304
Number of HSP's gapped (non-prelim): 13
length of query: 118
length of database: 14,793,348
effective HSP length: 73
effective length of query: 45
effective length of database: 12,052,636
effective search space: 542368620
effective search space used: 542368620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)
- SilkBase 1999-2023 -