Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000212-TA|BGIBMGA000212-PA|IPR009041|Proteinase
inhibitor, PMP and SGCI
(118 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g22510.1 68414.m02812 zinc finger (C3HC4-type RING finger) fa... 31 0.27
At5g54020.1 68418.m06719 expressed protein 30 0.47
At2g19650.1 68415.m02296 DC1 domain-containing protein contains ... 29 0.82
At1g10890.1 68414.m01251 F-box family protein contains Pfam PF00... 29 0.82
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 28 1.4
At5g51000.1 68418.m06323 F-box family protein contains F-box dom... 28 1.9
At4g06526.1 68417.m00938 hypothetical protein 27 2.5
At1g73960.1 68414.m08565 expressed protein similar to TATA bindi... 27 2.5
At2g04680.1 68415.m00478 DC1 domain-containing protein contains ... 27 4.4
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 26 5.8
At5g02710.1 68418.m00210 expressed protein contains Pfam PF03692... 26 5.8
At1g04730.1 68414.m00469 AAA-type ATPase family protein contains... 26 5.8
At5g42390.1 68418.m05161 metalloendopeptidase identical to chlor... 26 7.6
At5g07640.1 68418.m00875 zinc finger (C3HC4-type RING finger) fa... 26 7.6
>At1g22510.1 68414.m02812 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 185
Score = 30.7 bits (66), Expect = 0.27
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 20 PENKNCLLCEAQDSGACRSMPSCVYCEPTVTALCERST---PCLRCTVIKNPFFKCIPGE 76
PEN+ C +C + C+S S +C + + + PC +C + + P +P E
Sbjct: 5 PENELCSICHGHFNAPCQSNCSHWFCGNCIMLVWRHGSTLRPC-KCPLCRRPISLLVPSE 63
Query: 77 K 77
+
Sbjct: 64 E 64
>At5g54020.1 68418.m06719 expressed protein
Length = 556
Score = 29.9 bits (64), Expect = 0.47
Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 31 QDSGACRSMPSCVYCEPTVTALCERSTPCLRCTVI-KNPFFKCIPGEKYMDECDSCRCTD 89
Q S C++ + + +P +C+ + C+RCT + + +C + ++ C D
Sbjct: 406 QSSRQCQACGTKIDHDPLSCTVCDDYSLCMRCTTLPRKVKHRC--DDHFLSLCQGSSVND 463
Query: 90 GHSGWCTNQYCEFRS 104
WC CE ++
Sbjct: 464 SGDLWC--DICETKT 476
>At2g19650.1 68415.m02296 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 682
Score = 29.1 bits (62), Expect = 0.82
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 22 NKNCLLCEAQDSGACRSMPSCVYCEPTVTALCERSTP 58
+K CLLC + G R + C C ++ C ++ P
Sbjct: 226 DKKCLLCREEFDGIHRQLHHCGVCNFSICRSCMKNPP 262
>At1g10890.1 68414.m01251 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 592
Score = 29.1 bits (62), Expect = 0.82
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 3 PKPPHQYWEEETSLTLVPENKNCLLCEAQDS 33
P P H Y+ E +L+ V E++ +LC+ Q S
Sbjct: 441 PLPFHSYYAETVTLSCVKEDQLSVLCQRQPS 471
>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 4706
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 37 RSMPSCVYCEPTVTALCERSTPCL-RCTVIKNPFFKCIPGEKYMDE 81
R +P VY + A S CL C +++ FFK +P + ++ E
Sbjct: 2021 REVPEGVYSKLLAVAQSGESCICLLSCNLLEKLFFKLLPADWHLSE 2066
>At5g51000.1 68418.m06323 F-box family protein contains F-box domain
Pfam:PF00646
Length = 378
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 6 PHQYWEEETSLTLVPENKNCLLCEAQDSGACRSMPSCVYCE 46
P+ YW E+ S LV E K + D C++ + + E
Sbjct: 297 PNSYWFEDLSFFLVDEKKKVAMVSELDIETCKNYKTYILGE 337
>At4g06526.1 68417.m00938 hypothetical protein
Length = 506
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 58 PCLRCTVIKNPFFKCI-PGEK--YMDECDSCRCTDG 90
PC C+ +P +C+ P YMD+C C C G
Sbjct: 281 PCEICSHTDHPTKECLYPPHTMPYMDDCAKCSCCGG 316
>At1g73960.1 68414.m08565 expressed protein similar to TATA binding
protein associated factor (GI:2827282) [Homo sapiens];
similar to Transcription initiation factor TFIID 150 kDa
subunit (TAFII-150) (TAFII150) (Swiss-Prot:Q24325)
[Drosophila melanogaster]
Length = 1390
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Query: 24 NCLLCEAQDSGA-C-RSMPSC 42
NC +C+A DSGA C S PSC
Sbjct: 404 NCAVCKADDSGAMCLSSSPSC 424
>At2g04680.1 68415.m00478 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 657
Score = 26.6 bits (56), Expect = 4.4
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 21 ENKNCLLCEAQDSGACRSMPSCVYCEPTVTALCERSTPCLR 61
+NK CLLCE + + C C T+ C ++ P +R
Sbjct: 199 DNK-CLLCEEEFDQQHPKIHHCDVCNFTICRACMKNAPPVR 238
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385:
'chromo' (CHRromatin Organization MOdifier)
Length = 2228
Score = 26.2 bits (55), Expect = 5.8
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 42 CVYCEPTVTALCERSTPCLRCTVIKNPFFKCIPGEKYMDECDSC 85
CV C+ LC S P T NP K IP K++ C C
Sbjct: 64 CVICDLGGDLLCCDSCPRTYHTACLNPPLKRIPNGKWI--CPKC 105
>At5g02710.1 68418.m00210 expressed protein contains Pfam PF03692:
Uncharacterised protein family (UPF0153)
Length = 176
Score = 26.2 bits (55), Expect = 5.8
Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 59 CLRCTVIKNPFFKCIPGEKY--MDECDSCRCTDGHSGWCTNQYCEFRSLHLYA 109
C C I F P E + D+ + R G GWC N R +YA
Sbjct: 63 CGACCKIAKDFSFATPDEIFDNPDDVELYRSMIGDDGWCLNYDKATRKCSIYA 115
>At1g04730.1 68414.m00469 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 954
Score = 26.2 bits (55), Expect = 5.8
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 10 WEEETSLTLVPENKNCLLCEAQDSG----ACRSMPSCVYCEPTVTALCERSTPCLRCTVI 65
W +++ LT PE K LLC A G A + C Y + A ERS + ++
Sbjct: 333 WNKKSKLTGPPEQKILLLCGAPGLGKTTLAHIAAKHCGYRVVEINASDERSASAIETRIL 392
>At5g42390.1 68418.m05161 metalloendopeptidase identical to
chloroplast processing enzyme metalloendopeptidase
[Arabidopsis thaliana] gi|2827039|gb|AAC39482
Length = 1265
Score = 25.8 bits (54), Expect = 7.6
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 11 EEETSLTLVPENKNCLLCEAQDSGACRSMPSCVYCEPTVTALCERS-TPCLR 61
+E T ++L CL C+ +G R++PS + + T +L S T LR
Sbjct: 86 KEATGISLSQGRNFCLTCKRNQAGIRRALPS-AFVDRTAFSLSRSSLTSSLR 136
>At5g07640.1 68418.m00875 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518 and a IBR domain,
Pfam:PF01485
Length = 316
Score = 25.8 bits (54), Expect = 7.6
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 73 IPGEKYMDECDSCRCTDGHSGWCTNQYCE 101
+ G + EC C C + +GW + CE
Sbjct: 271 LSGVRKCTECGYCFCGECRAGWHSGMTCE 299
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.322 0.136 0.480
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,408,986
Number of Sequences: 28952
Number of extensions: 132791
Number of successful extensions: 267
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 262
Number of HSP's gapped (non-prelim): 14
length of query: 118
length of database: 12,070,560
effective HSP length: 72
effective length of query: 46
effective length of database: 9,986,016
effective search space: 459356736
effective search space used: 459356736
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)
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