Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000211-TA|BGIBMGA000211-PA|IPR001356|Homeobox,
IPR009057|Homeodomain-like
(124 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0020 - 20267190-20267612,20269086-20269495,20269573-202697... 37 0.004
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575... 36 0.012
04_04_0841 - 28574497-28574883,28575815-28576188,28576262-285764... 34 0.028
08_01_0246 - 2028701-2029060,2029149-2030606,2030729-2031160 34 0.038
08_01_0574 + 5103466-5103534,5104526-5104806,5104959-5105127 33 0.066
04_04_1231 - 31934745-31935125,31935230-31935325,31936215-319362... 33 0.066
02_05_0286 - 27506925-27507278,27508439-27508812,27509041-275092... 33 0.066
01_06_0212 + 27575406-27575604,27575723-27576241,27576371-27576387 32 0.15
02_05_0618 + 30400338-30400452,30400553-30400692,30400805-304010... 28 1.9
08_02_0670 - 19877091-19877618,19880033-19880436,19880505-19880622 27 4.3
08_02_0052 + 11699468-11699700,11699799-11699916,11699991-117006... 27 5.7
04_04_1636 + 34951841-34954322,34954440-34954627,34955737-349558... 26 10.0
>09_06_0020 -
20267190-20267612,20269086-20269495,20269573-20269747,
20270833-20271066,20271164-20271265,20271354-20272091,
20272204-20272321,20272417-20272667,20272768-20272932
Length = 871
Score = 37.1 bits (82), Expect = 0.004
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 53 DAGRPRKVRRSRTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQ 105
D PRK ++ T Q+ ELE F + +PD R EL+ RL L +V+
Sbjct: 115 DNSNPRKKKKRYHRHTPQQIQELEAVFKECPHPDEKQRMELSRRLNLESRQVK 167
>05_07_0112 -
27755604-27756449,27756624-27756887,27757428-27757532,
27757626-27758249,27759048-27759596,27759665-27760372,
27760449-27760658,27761266-27761421,27761524-27761664,
27762015-27762101,27762209-27762309,27763071-27763293,
27763384-27763548,27763621-27763713,27763801-27764292,
27764729-27764805,27765184-27765681,27765818-27766046
Length = 1855
Score = 35.5 bits (78), Expect = 0.012
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 54 AGRPRKVRRSRTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQV 106
+G KV+R T YQL LER + + YP+ R EL+++L L++ ++Q+
Sbjct: 52 SGSSGKVKRVMKT--PYQLEVLERTYTEDPYPNETMRAELSVKLGLTDRQLQM 102
>04_04_0841 -
28574497-28574883,28575815-28576188,28576262-28576439,
28576816-28576896,28578134-28578361,28578460-28578579,
28578646-28579353,28579471-28579588,28579686-28579978,
28580101-28580169
Length = 851
Score = 34.3 bits (75), Expect = 0.028
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 50 EAIDAGRPRKVRRSRTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQ 105
E + G P K ++ T Q+ ELE F + +PD R EL+ RL L +V+
Sbjct: 94 EDAEHGNPPKRKKRYHRHTPQQIQELEAMFKECPHPDEKQRAELSKRLGLEPRQVK 149
>08_01_0246 - 2028701-2029060,2029149-2030606,2030729-2031160
Length = 749
Score = 33.9 bits (74), Expect = 0.038
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 56 RPRKVRRSRTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQ 105
RPRK R R T +Q+ ELE F + +PD R+EL+ L L +V+
Sbjct: 86 RPRKKRYHR--HTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVK 133
>08_01_0574 + 5103466-5103534,5104526-5104806,5104959-5105127
Length = 172
Score = 33.1 bits (72), Expect = 0.066
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 56 RPRKVRRSRTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQ 105
RPRK R R T +Q+ E+E F + +PD R+EL+ L L +V+
Sbjct: 98 RPRKKRYHR--HTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVK 145
>04_04_1231 -
31934745-31935125,31935230-31935325,31936215-31936277,
31936393-31936593,31936738-31936839,31936972-31937430,
31937524-31937712,31938325-31938442,31939033-31939307,
31939853-31939930
Length = 653
Score = 33.1 bits (72), Expect = 0.066
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 56 RPRKVRRSRTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQ 105
RPRK R R T +Q+ E+E F + +PD R+EL+ L L +V+
Sbjct: 99 RPRKKRYHR--HTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVK 146
>02_05_0286 -
27506925-27507278,27508439-27508812,27509041-27509218,
27510878-27511105,27511215-27511316,27511415-27512131,
27512270-27512387,27512500-27512744,27512854-27513054,
27513920-27514324
Length = 973
Score = 33.1 bits (72), Expect = 0.066
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 49 LEAIDAGRPRKVRRSRTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQ 105
+E + RK ++ T Q+ ELE F + +PD R EL+ RL L +V+
Sbjct: 256 VEDAEPSNSRKRKKRYHRHTPQQIQELEALFKECPHPDEKQRAELSRRLSLDARQVK 312
>01_06_0212 + 27575406-27575604,27575723-27576241,27576371-27576387
Length = 244
Score = 31.9 bits (69), Expect = 0.15
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 70 YQLHELERAFDKTQYPDVFTREELAMRLELSEARVQV 106
YQL LE+ + QYP R EL+ ++ LS+ ++Q+
Sbjct: 56 YQLEVLEKTYAVEQYPSETLRAELSAKIGLSDRQLQM 92
>02_05_0618 +
30400338-30400452,30400553-30400692,30400805-30401044,
30401157-30401693
Length = 343
Score = 28.3 bits (60), Expect = 1.9
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 50 EAIDAGRPRKVRRSRTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQV 106
E D P K RR T Q+H LER+F++ + + ELA +L L +V V
Sbjct: 68 EYYDEQLPEKKRR----LTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAV 120
>08_02_0670 - 19877091-19877618,19880033-19880436,19880505-19880622
Length = 349
Score = 27.1 bits (57), Expect = 4.3
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 50 EAIDAGRPRKVRRSRTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQV 106
E D P K RR T Q+ LER+F++ + + ELA RL ++ +V V
Sbjct: 77 EYYDEQAPEKKRR----LTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAV 129
>08_02_0052 +
11699468-11699700,11699799-11699916,11699991-11700659,
11700741-11700842,11700921-11701181,11701838-11702009,
11702128-11702528,11703171-11703587
Length = 790
Score = 26.6 bits (56), Expect = 5.7
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 58 RKVRRSRTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQ 105
RK R T Q L RAF PD ++LA L ++E +++
Sbjct: 59 RKKPRRYQLLTMQQKETLNRAFQSCPNPDRNDLKKLAKELNMTETQIK 106
>04_04_1636 +
34951841-34954322,34954440-34954627,34955737-34955838,
34956101-34956177,34956258-34956319,34956504-34956511
Length = 972
Score = 25.8 bits (54), Expect = 10.0
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 80 DKTQYPDVFTREEL 93
DKT+YPDVF R ++
Sbjct: 452 DKTRYPDVFVRAQV 465
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.132 0.364
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,971,638
Number of Sequences: 37544
Number of extensions: 44815
Number of successful extensions: 100
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 89
Number of HSP's gapped (non-prelim): 12
length of query: 124
length of database: 14,793,348
effective HSP length: 74
effective length of query: 50
effective length of database: 12,015,092
effective search space: 600754600
effective search space used: 600754600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)
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