GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000211-TA|BGIBMGA000211-PA|IPR001356|Homeobox,
IPR009057|Homeodomain-like
         (124 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-13|CAD27764.1|  319|Anopheles gambiae putative transcri...    60   2e-11
AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox prote...    41   1e-05
AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein hom...    38   8e-05
AF269156-1|AAF91401.1|   52|Anopheles gambiae transcription fact...    38   1e-04
AF269154-1|AAF91399.1|   76|Anopheles gambiae transcription fact...    35   7e-04
AF080563-1|AAC31943.1|  310|Anopheles gambiae Ultrabithorax home...    35   0.001
AF080562-1|AAC31942.1|  327|Anopheles gambiae Ultrabithorax home...    35   0.001
AF269155-1|AAF91400.1|   59|Anopheles gambiae transcription fact...    34   0.001
AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced ...    34   0.001
AF269153-1|AAF91398.1|  109|Anopheles gambiae labial homeotic pr...    34   0.002
AF080566-1|AAC31946.1|  308|Anopheles gambiae abdominal-A homeot...    33   0.003
AF080565-1|AAC31945.1|  324|Anopheles gambiae Antennapedia homeo...    33   0.003
DQ383819-1|ABD38144.1|  377|Anopheles gambiae abdominal-B protein.     32   0.007
AF230521-1|AAF36974.2|  185|Anopheles gambiae homeobox transcrip...    31   0.009

>AJ439060-13|CAD27764.1|  319|Anopheles gambiae putative
           transcription factor protein.
          Length = 319

 Score = 60.5 bits (140), Expect = 2e-11
 Identities = 27/49 (55%), Positives = 36/49 (73%)

Query: 58  RKVRRSRTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQV 106
           ++ RR RT FT  QL +LE  FDKT YPDV  RE+LA++++L E RV+V
Sbjct: 185 KRKRRHRTIFTEEQLEQLEATFDKTHYPDVLLREKLAIKVDLKEERVEV 233


>AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox protein
           protein.
          Length = 338

 Score = 41.1 bits (92), Expect = 1e-05
 Identities = 22/46 (47%), Positives = 28/46 (60%)

Query: 61  RRSRTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQV 106
           +R RT FT+ QL ELER F    Y     R E+A RL LSE +V++
Sbjct: 197 KRIRTAFTSTQLLELEREFAGNMYLTRLRRIEIATRLRLSEKQVKI 242


>AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein
           homolog protein.
          Length = 394

 Score = 38.3 bits (85), Expect = 8e-05
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 55  GRPRKVRRSRTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQV 106
           G+ R   + R  +T  Q  ELE+ F  T+Y  +  + ELA  L+LSE +V++
Sbjct: 210 GKTRTKDKYRVVYTDQQRLELEKEFHYTRYITIRRKAELAQNLQLSERQVKI 261


>AF269156-1|AAF91401.1|   52|Anopheles gambiae transcription factor
           zen protein.
          Length = 52

 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 19/46 (41%), Positives = 29/46 (63%)

Query: 61  RRSRTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQV 106
           +RSRT FT+ QL ELE+ F   +Y     R EL  +L L+E ++++
Sbjct: 1   KRSRTAFTSSQLVELEKEFHSNRYLCRPRRIELTRKLALTERQIKI 46


>AF269154-1|AAF91399.1|   76|Anopheles gambiae transcription factor
           proboscipedia protein.
          Length = 76

 Score = 35.1 bits (77), Expect = 7e-04
 Identities = 20/46 (43%), Positives = 28/46 (60%)

Query: 61  RRSRTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQV 106
           RR RT +T  QL ELE+ F   +Y     R E+A  L+L+E +V+V
Sbjct: 25  RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKV 70


>AF080563-1|AAC31943.1|  310|Anopheles gambiae Ultrabithorax
           homeotic protein IVa protein.
          Length = 310

 Score = 34.7 bits (76), Expect = 0.001
 Identities = 18/46 (39%), Positives = 26/46 (56%)

Query: 61  RRSRTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQV 106
           RR R T+T YQ  ELE+ F    Y     R E+A  L L+E ++++
Sbjct: 220 RRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKI 265


>AF080562-1|AAC31942.1|  327|Anopheles gambiae Ultrabithorax
           homeotic protein IIa protein.
          Length = 327

 Score = 34.7 bits (76), Expect = 0.001
 Identities = 18/46 (39%), Positives = 26/46 (56%)

Query: 61  RRSRTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQV 106
           RR R T+T YQ  ELE+ F    Y     R E+A  L L+E ++++
Sbjct: 237 RRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKI 282


>AF269155-1|AAF91400.1|   59|Anopheles gambiae transcription factor
           Deformed protein.
          Length = 59

 Score = 34.3 bits (75), Expect = 0.001
 Identities = 17/46 (36%), Positives = 27/46 (58%)

Query: 61  RRSRTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQV 106
           +R RT +T +Q+ ELE+ F    Y     R E+A  L LSE ++++
Sbjct: 2   KRQRTAYTRHQILELEKEFHYNXYLTRRRRIEIAHTLVLSERQIKI 47


>AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced
           homeotic protein protein.
          Length = 372

 Score = 34.3 bits (75), Expect = 0.001
 Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 59  KVRRSRTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQV 106
           + +R RT++T YQ  ELE+ F   +Y     R E+A  L L+E ++++
Sbjct: 279 ETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKI 326


>AF269153-1|AAF91398.1|  109|Anopheles gambiae labial homeotic
           protein protein.
          Length = 109

 Score = 33.9 bits (74), Expect = 0.002
 Identities = 18/43 (41%), Positives = 25/43 (58%)

Query: 64  RTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQV 106
           RT FT  QL ELE+ F   +Y     R E+A  L L+E +V++
Sbjct: 57  RTNFTNKQLTELEKEFHFNKYLTRARRIEIANALHLNETQVKI 99


>AF080566-1|AAC31946.1|  308|Anopheles gambiae abdominal-A homeotic
           protein protein.
          Length = 308

 Score = 33.1 bits (72), Expect = 0.003
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 55  GRPRKVRRSRTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQV 106
           G PR  RR R T+T +Q  ELE+ F    Y     R E+A  L L+E ++++
Sbjct: 135 GCPR--RRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKI 184


>AF080565-1|AAC31945.1|  324|Anopheles gambiae Antennapedia homeotic
           protein protein.
          Length = 324

 Score = 33.1 bits (72), Expect = 0.003
 Identities = 17/46 (36%), Positives = 27/46 (58%)

Query: 61  RRSRTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQV 106
           +R R T+T YQ  ELE+ F   +Y     R E+A  L L+E ++++
Sbjct: 245 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKI 290


>DQ383819-1|ABD38144.1|  377|Anopheles gambiae abdominal-B protein.
          Length = 377

 Score = 31.9 bits (69), Expect = 0.007
 Identities = 17/47 (36%), Positives = 26/47 (55%)

Query: 60  VRRSRTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQV 106
           VR+ R  ++ +Q  ELE+ F    Y     R ELA  L L+E +V++
Sbjct: 270 VRKKRKPYSKFQTLELEKEFLFNAYVSKQKRWELARNLNLTERQVKI 316


>AF230521-1|AAF36974.2|  185|Anopheles gambiae homeobox
           transcription factor protein.
          Length = 185

 Score = 31.5 bits (68), Expect = 0.009
 Identities = 14/46 (30%), Positives = 30/46 (65%)

Query: 61  RRSRTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQV 106
           +R+R +++ +Q  ELE+ F   +Y +   R E+A  L+L+E ++++
Sbjct: 7   KRTRQSYSRHQTIELEKEFHFNRYLNRRRRIEIASMLKLTERQIKI 52


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.132    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,398
Number of Sequences: 2123
Number of extensions: 1524
Number of successful extensions: 16
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 14
length of query: 124
length of database: 516,269
effective HSP length: 57
effective length of query: 67
effective length of database: 395,258
effective search space: 26482286
effective search space used: 26482286
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)