GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000211-TA|BGIBMGA000211-PA|IPR001356|Homeobox,
IPR009057|Homeodomain-like
         (124 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    43   1e-06
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    40   8e-06
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    36   1e-04
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    33   7e-04
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    33   7e-04
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    33   7e-04
AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.        21   3.1  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 42.7 bits (96), Expect = 1e-06
 Identities = 22/49 (44%), Positives = 30/49 (61%)

Query: 58  RKVRRSRTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQV 106
           R+ RR+RT FT  QL  LE  F  T+Y  V  R  LA+ L L+E +V++
Sbjct: 6   REARRARTAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKI 54


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 39.9 bits (89), Expect = 8e-06
 Identities = 19/46 (41%), Positives = 28/46 (60%)

Query: 61  RRSRTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQV 106
           R+ RT FTT QL  LE+ F + QY  +  R E +  L L+E +V++
Sbjct: 10  RKPRTPFTTQQLLSLEKKFREKQYLTIAERAEFSSSLHLTETQVKI 55


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 35.9 bits (79), Expect = 1e-04
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 59  KVRRSRTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQV 106
           +V+R RT++T YQ  ELE+ F   +Y     R E+A  L L+E ++++
Sbjct: 7   EVKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKI 54


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 33.5 bits (73), Expect = 7e-04
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 55  GRPRKVRRSRTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQV 106
           G PR  RR R T+T +Q  ELE+ F    Y     R E+A  L L+E ++++
Sbjct: 5   GCPR--RRGRQTYTRFQTLELEKEFHYNHYLTRRRRIEIAHALCLTERQIKI 54


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 33.5 bits (73), Expect = 7e-04
 Identities = 17/46 (36%), Positives = 27/46 (58%)

Query: 61  RRSRTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQV 106
           +R R T+T YQ  ELE+ F   +Y     R E+A  L L+E ++++
Sbjct: 9   KRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKI 54


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 33.5 bits (73), Expect = 7e-04
 Identities = 17/46 (36%), Positives = 27/46 (58%)

Query: 61  RRSRTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQV 106
           +R R T+T YQ  ELE+ F   +Y     R E+A  L L+E ++++
Sbjct: 271 KRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKI 316


>AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.
          Length = 43

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 81  KTQYPDVFTREELAMRLELSEARVQV 106
           +TQY  +  R ELA  L L++ +V++
Sbjct: 2   RTQYLALPERAELAASLGLTQTQVKI 27


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.132    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,347
Number of Sequences: 429
Number of extensions: 416
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 124
length of database: 140,377
effective HSP length: 51
effective length of query: 73
effective length of database: 118,498
effective search space:  8650354
effective search space used:  8650354
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.9 bits)
S2: 39 (19.8 bits)