Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000211-TA|BGIBMGA000211-PA|IPR001356|Homeobox,
IPR009057|Homeodomain-like
(124 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g28420.1 68414.m03494 homeobox transcription factor, putative... 40 6e-04
At5g52170.1 68418.m06476 homeobox-leucine zipper family protein ... 32 0.13
At4g00730.1 68417.m00099 anthocyaninless2 (ANL2) nearly identica... 31 0.22
At3g61150.1 68416.m06843 homeobox-leucine zipper family protein ... 31 0.22
At4g21750.1 68417.m03148 L1 specific homeobox gene (ML1) / ovule... 31 0.30
At4g25530.1 68417.m03681 homeodomain protein (FWA) identical to ... 30 0.52
At4g04890.1 68417.m00712 homeobox-leucine zipper protein protode... 30 0.52
At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to... 29 0.91
At5g17320.1 68418.m02029 homeobox-leucine zipper family protein ... 29 1.2
At2g32370.1 68415.m03956 homeobox-leucine zipper family protein ... 27 2.8
At1g05230.2 68414.m00529 homeobox-leucine zipper family protein ... 27 2.8
At1g05230.1 68414.m00528 homeobox-leucine zipper family protein ... 27 2.8
At5g46880.1 68418.m05777 homeobox-leucine zipper family protein ... 26 6.4
At3g01470.1 68416.m00071 homeobox-leucine zipper protein 5 (HAT5... 26 6.4
>At1g28420.1 68414.m03494 homeobox transcription factor, putative
similar to homeobox transcription factor Hox7 GI:19486
[Lycopersicon peruvianum]
Length = 1703
Score = 39.5 bits (88), Expect = 6e-04
Identities = 17/48 (35%), Positives = 31/48 (64%)
Query: 59 KVRRSRTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQV 106
+V+ R T +QL LE+ + + +YP TR EL+ +L+LS+ ++Q+
Sbjct: 36 RVKPKRQMKTPFQLETLEKVYSEEKYPSEATRAELSEKLDLSDRQLQM 83
>At5g52170.1 68418.m06476 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
Anthocyaninless2 (ANL2) (GP:5702094) [Arabidopsis
thaliana]; contains Pfam PF00046: Homeobox domain and
Pfam PF01852: START domain
Length = 682
Score = 31.9 bits (69), Expect = 0.13
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 56 RPRKVRRSRT--TFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQ 105
RP+K +R T+YQ+ ELE F + +P+ R EL +L L +++
Sbjct: 51 RPKKKKRKTKYHRHTSYQIQELESFFKECPHPNEKQRLELGKKLTLESKQIK 102
>At4g00730.1 68417.m00099 anthocyaninless2 (ANL2) nearly identical
to Anthocyaninless2 [Arabidopsis thaliana] GI:5702094
Length = 802
Score = 31.1 bits (67), Expect = 0.22
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 57 PRKVRRSRTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQ 105
PRK R R T Q+ ELE F + +PD R EL+ RL L +V+
Sbjct: 133 PRKKRYHR--HTPQQIQELESMFKECPHPDEKQRLELSKRLCLETRQVK 179
>At3g61150.1 68416.m06843 homeobox-leucine zipper family protein /
homeodomain GLABRA2 like protein 1 (HD-GL2-1) similar to
Anthocyaninless2 (ANL2) (GP:5702094) Arabidopsis
thaliana, EMBL:AF077335
Length = 808
Score = 31.1 bits (67), Expect = 0.22
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 56 RPRKVRRSRTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQ 105
RP K ++ T Q+ +LE F + +PD R +L+ RL L +V+
Sbjct: 106 RPLKKKKRYHRHTPKQIQDLESVFKECAHPDEKQRLDLSRRLNLDPRQVK 155
>At4g21750.1 68417.m03148 L1 specific homeobox gene (ML1) /
ovule-specific homeobox protein A20 nearly identical to
meristem L1 layer homeobox protein A20 (AtML1)
[Arabidopsis thaliana] GI:1881536, protodermal factor2
(PDF2) [Arabidopsis thaliana] GI:14276060
Length = 762
Score = 30.7 bits (66), Expect = 0.30
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 56 RPRKVRRSRTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQ 105
RP K +R T Q+ ELE F + +PD R+EL+ L L +V+
Sbjct: 59 RPNKKKRYHR-HTQRQIQELESFFKECPHPDDKQRKELSRELSLEPLQVK 107
>At4g25530.1 68417.m03681 homeodomain protein (FWA) identical to
Homeobox protein FWA (SP:Q9FVI6) [Arabidopsis thaliana];
contains Pfam profiles PF01852: START domain and
PF00046: Homeobox domain; identical to cDNA
homeodomain-containing transcription factor FWA
(FWA)GI:13506819
Length = 686
Score = 29.9 bits (64), Expect = 0.52
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 53 DAGRPRKVRRSRTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQ 105
D GR R+ R T YQ ELE + + +P R EL RL + +V+
Sbjct: 37 DGGRMRRTHRR----TAYQTQELENFYMENPHPTEEQRYELGQRLNMGVNQVK 85
>At4g04890.1 68417.m00712 homeobox-leucine zipper protein
protodermal factor 2 (PDF2) identical to GP|14276060|
protodermal factor2 (GI:14276060)
Length = 743
Score = 29.9 bits (64), Expect = 0.52
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 56 RPRKVRRSRTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQ 105
RP K +R T Q+ ELE F + +PD R+EL+ L L +V+
Sbjct: 59 RPNKKKRYHR-HTQRQIQELESFFKECPHPDDKQRKELSRDLNLEPLQVK 107
>At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to
homeotic protein HAT 3.1 (GI:11994474) [Arabidopsis
thaliana]
Length = 723
Score = 29.1 bits (62), Expect = 0.91
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 54 AGRPRKVRRSRTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARV 104
+G K S T + L +F + QYPD T+E LA L+++ +V
Sbjct: 608 SGEIEKSSSSACKQTDPKTQRLYISFQENQYPDKATKESLAKELQMTVKQV 658
>At5g17320.1 68418.m02029 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
Roc1 (GI:1907210) [Oryza sativa]; contains Pfam
PF00046: Homeobox domain and Pfam PF01852: START domain
Length = 718
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 68 TTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQ 105
T Q+H LE F + +PD F R L L L +++
Sbjct: 34 TNEQIHRLETYFKECPHPDEFQRRLLGEELNLKPKQIK 71
>At2g32370.1 68415.m03956 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
HD-Zip homeo domain OCL5 protein (GI:8920427) [Zea
mays]; contains Pfam PF00046: Homeobox domain and Pfam
PF01852: START domain
Length = 721
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 57 PRKVRRSRTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQ 105
PR ++ T Q+ E+E F + +PD R +L+ +L L +++
Sbjct: 65 PRHKKKKYNRHTQLQISEMEAFFRECPHPDDKQRYDLSAQLGLDPVQIK 113
>At1g05230.2 68414.m00529 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
homeobox 1 (GP:12002853) {Picea abies}; Strong
similarity to Phalaenopsis homeobox protein (gb|U34743)
Length = 721
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 53 DAGRPRKVRRSRTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQ 105
D P K +R T Q+ E+E F + +PD R++L+ L L +V+
Sbjct: 58 DPLHPNKKKRYHR-HTQLQIQEMEAFFKECPHPDDKQRKQLSRELNLEPLQVK 109
>At1g05230.1 68414.m00528 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
homeobox 1 (GP:12002853) {Picea abies}; Strong
similarity to Phalaenopsis homeobox protein (gb|U34743)
Length = 721
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 53 DAGRPRKVRRSRTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQ 105
D P K +R T Q+ E+E F + +PD R++L+ L L +V+
Sbjct: 58 DPLHPNKKKRYHR-HTQLQIQEMEAFFKECPHPDDKQRKQLSRELNLEPLQVK 109
>At5g46880.1 68418.m05777 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
HD-Zip homeo domain OCL4 protein GI:8920425 from [Zea
mays]; contains Pfam PF00046: Homeobox domain and Pfam
PF01852: START domain
Length = 820
Score = 26.2 bits (55), Expect = 6.4
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 50 EAIDAGRPRKVRRSRT-TFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQ 105
E D +P ++ R T Q+ E+E F + +PD R+ L+ L L +V+
Sbjct: 100 ELHDDEQPPPAKKKRYHRHTNRQIQEMEALFKENPHPDDKQRKRLSAELGLKPRQVK 156
>At3g01470.1 68416.m00071 homeobox-leucine zipper protein 5 (HAT5) /
HD-ZIP protein 5 / HD-ZIP protein (HB-1) identical to
homeobox-leucine zipper protein HAT5 (HD-ZIP protein 5)
(HD-ZIP protein ATHB-1) GB:Q02283 [Arabidopsis thaliana]
Length = 272
Score = 26.2 bits (55), Expect = 6.4
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 57 PRKVRRSRTTFTTYQLHELERAFDKTQYPDVFTREELAMRLELSEARVQV 106
P K RR TT Q+H LE++F+ + + +LA +L L +V V
Sbjct: 66 PEKKRR----LTTEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAV 111
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.319 0.132 0.364
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,607,255
Number of Sequences: 28952
Number of extensions: 35520
Number of successful extensions: 91
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 78
Number of HSP's gapped (non-prelim): 15
length of query: 124
length of database: 12,070,560
effective HSP length: 73
effective length of query: 51
effective length of database: 9,957,064
effective search space: 507810264
effective search space used: 507810264
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)
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