Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000210-TA|BGIBMGA000210-PA|undefined
         (222 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7846| Best HMM Match : CoCoA (HMM E-Value=0.00016)                  32   0.44 
SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.76 
SB_13975| Best HMM Match : SGS (HMM E-Value=3.4)                       31   0.76 
SB_19357| Best HMM Match : Metallothio_5 (HMM E-Value=3.4)             30   1.3  
SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_55144| Best HMM Match : CMAS (HMM E-Value=0.72)                     28   7.1  
SB_16293| Best HMM Match : LIM (HMM E-Value=9.5)                       28   7.1  
SB_57139| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_6581| Best HMM Match : HEAT (HMM E-Value=3e-05)                     27   9.4  

>SB_7846| Best HMM Match : CoCoA (HMM E-Value=0.00016)
          Length = 1284

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 153 IHRTWRRRLELEKKIKEDQASPGNYSVMCSNPNR 186
           +H   RR+ ELEKKI+E + S     VM  N N+
Sbjct: 593 LHEEKRRKEELEKKIEEMETSKNELLVMLENANK 626


>SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1318

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 164 EKKIKEDQASPGNYSVMCSNPNRLLQTQPGDVTRGYSDDLPPTDETELTYEVPLRDES 221
           E+  ++D  +   Y    S P  L ++    +TR  S+D  PT   E TY+ P+R +S
Sbjct: 539 ERARRDDLINGDRYDRPDSGPQNLARSN--SLTRKTSEDTYPTKRAEHTYDHPIRADS 594


>SB_13975| Best HMM Match : SGS (HMM E-Value=3.4)
          Length = 473

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 164 EKKIKEDQASPGNYSVMCSNPNRLLQTQPGDVTRGYSDDLPPTDETELTYEVPLRDES 221
           E+  ++D  +   Y    S P  L ++    +TR  S+D  PT   E TY+ P+R +S
Sbjct: 391 ERARRDDLINGDRYDRPDSGPQNLARSN--SLTRKTSEDTYPTKRAEHTYDHPIRADS 446


>SB_19357| Best HMM Match : Metallothio_5 (HMM E-Value=3.4)
          Length = 187

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 9   DLTCLGACSANCSA-GGEECGLGSGCPSEQTHFPAEV 44
           DL C G C   CSA G E+CG+   C  + T+   EV
Sbjct: 143 DLNCPG-CHFPCSACGSEKCGVECRCSRKWTYIDVEV 178


>SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2631

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/24 (50%), Positives = 13/24 (54%)

Query: 55  SIKEGSNVSCNFTFYQQGEIKFWF 78
           +I EGSNV C F FY  G     F
Sbjct: 213 TISEGSNVKCYFDFYGDGSSPIGF 236


>SB_55144| Best HMM Match : CMAS (HMM E-Value=0.72)
          Length = 529

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 164 EKKIKEDQASPGNYSVMCSNPNRLLQTQPGDVTRGYSDDLPPTDET 209
           + K+  DQ  P + S  C   N L  ++  D TRG +DDL  T+ T
Sbjct: 191 QSKLVHDQTRPRSRS--CGALNVLGTSRDPDSTRGSNDDLSLTNST 234


>SB_16293| Best HMM Match : LIM (HMM E-Value=9.5)
          Length = 162

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 67  TFYQQGEIKFWFRNQNTVTPNFTYPEPQR 95
           T   +GE+K  FRN+NT+ PN     P R
Sbjct: 127 TIRNEGELKLVFRNKNTI-PNIGIQAPLR 154


>SB_57139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 854

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 22  AGGEECGLGSGCPSEQTHFPAEVTSAGL 49
           +GGE C L + CPS+    P +V   GL
Sbjct: 210 SGGEPCKLDNKCPSDTHCHPDKVHRTGL 237


>SB_6581| Best HMM Match : HEAT (HMM E-Value=3e-05)
          Length = 1188

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 100 WLRRNQLQLQLTALWFKCVSGVHRLLLRLAGLQIS 134
           WL  N+L L +T   F  +    RL  R  G+ IS
Sbjct: 961 WLLANKLSLNITKTEFMIIGSRQRLKARAGGVNIS 995


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.133    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,787,957
Number of Sequences: 59808
Number of extensions: 304316
Number of successful extensions: 643
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 639
Number of HSP's gapped (non-prelim): 9
length of query: 222
length of database: 16,821,457
effective HSP length: 79
effective length of query: 143
effective length of database: 12,096,625
effective search space: 1729817375
effective search space used: 1729817375
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)