Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000210-TA|BGIBMGA000210-PA|undefined
         (222 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X04706-1|CAA28411.1|  255|Homo sapiens protein ( Human homeobox ...    33   0.79 
BC074797-1|AAH74797.1|  255|Homo sapiens homeobox D4 protein.          33   1.0  
BC016763-1|AAH16763.1|  255|Homo sapiens homeobox D4 protein.          33   1.0  
BC069297-1|AAH69297.1|  105|Homo sapiens keratin associated prot...    32   1.8  
BC069078-1|AAH69078.1|  105|Homo sapiens keratin associated prot...    32   1.8  
AJ406952-1|CAC27591.1|  105|Homo sapiens keratin associated prot...    32   1.8  
X17360-1|CAA35237.1|  255|Homo sapiens hox 5.1 protein protein.        31   4.2  
BC099901-1|AAH99901.1| 1003|Homo sapiens G protein-coupled recep...    31   4.2  
AY143365-1|AAN38972.1| 1003|Homo sapiens HE6 heptahelical recept...    31   4.2  
S83559-1|AAB50823.1|  134|Homo sapiens REV25-2 protein.                30   7.4  
U88965-1|AAC39932.1|  201|Homo sapiens unknown protein.                29   9.8  
AY143364-1|AAN38971.1|  979|Homo sapiens HE6 heptahelical recept...    29   9.8  
AL732578-3|CAI40670.1|  979|Homo sapiens G protein-coupled recep...    29   9.8  
AL732509-5|CAI41677.1|  979|Homo sapiens G protein-coupled recep...    29   9.8  

>X04706-1|CAA28411.1|  255|Homo sapiens protein ( Human homeobox
           gene (clone HHO.c13). ).
          Length = 255

 Score = 33.1 bits (72), Expect = 0.79
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 6/89 (6%)

Query: 23  GGEECGLGSGCPSEQTHFPAEVTSAGLRSRENSIKEGSNVSCNFTFYQQGEIKFWFR--N 80
           GG     G  CP+     PA +  A   S+ +  +  S  +      Q   +  W +  +
Sbjct: 86  GGHYAAPGEPCPAPPAPPPAPLPGARAYSQSDPKQPPSGTALK----QPAVVYPWMKKVH 141

Query: 81  QNTVTPNFTYPEPQRVSIPWLRRNQLQLQ 109
            N+V PN+T  EP+R    + R+  L+L+
Sbjct: 142 ANSVNPNYTGGEPKRSRTAYTRQQVLELE 170


>BC074797-1|AAH74797.1|  255|Homo sapiens homeobox D4 protein.
          Length = 255

 Score = 32.7 bits (71), Expect = 1.0
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 6/89 (6%)

Query: 23  GGEECGLGSGCPSEQTHFPAEVTSAGLRSRENSIKEGSNVSCNFTFYQQGEIKFWFR--N 80
           GG     G  CP+     PA +  A   S+ +  +  S  +      Q   +  W +  +
Sbjct: 86  GGHYAAPGEPCPAPPAPPPAPLPGARAYSQSDPKQPPSGTALK----QPAVVYPWMKKVH 141

Query: 81  QNTVTPNFTYPEPQRVSIPWLRRNQLQLQ 109
            N+V PN+T  EP+R    + R+  L+L+
Sbjct: 142 VNSVNPNYTGGEPKRSRTAYTRQQVLELE 170


>BC016763-1|AAH16763.1|  255|Homo sapiens homeobox D4 protein.
          Length = 255

 Score = 32.7 bits (71), Expect = 1.0
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 6/89 (6%)

Query: 23  GGEECGLGSGCPSEQTHFPAEVTSAGLRSRENSIKEGSNVSCNFTFYQQGEIKFWFR--N 80
           GG     G  CP+     PA +  A   S+ +  +  S  +      Q   +  W +  +
Sbjct: 86  GGHYAAPGEPCPAPPAPPPAPLPGARAYSQSDPKQPPSGTALK----QPAVVYPWMKKVH 141

Query: 81  QNTVTPNFTYPEPQRVSIPWLRRNQLQLQ 109
            N+V PN+T  EP+R    + R+  L+L+
Sbjct: 142 VNSVNPNYTGGEPKRSRTAYTRQQVLELE 170


>BC069297-1|AAH69297.1|  105|Homo sapiens keratin associated
          protein 17-1 protein.
          Length = 105

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)

Query: 12 CLGACSANCSAGGEECGLGSGC 33
          C G C + C  GG  CG GSGC
Sbjct: 28 CCGCCGSCCGCGGSGCG-GSGC 48


>BC069078-1|AAH69078.1|  105|Homo sapiens keratin associated
          protein 17-1 protein.
          Length = 105

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)

Query: 12 CLGACSANCSAGGEECGLGSGC 33
          C G C + C  GG  CG GSGC
Sbjct: 28 CCGCCGSCCGCGGSGCG-GSGC 48


>AJ406952-1|CAC27591.1|  105|Homo sapiens keratin associated
          protein 16.1 protein.
          Length = 105

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)

Query: 12 CLGACSANCSAGGEECGLGSGC 33
          C G C + C  GG  CG GSGC
Sbjct: 28 CCGCCGSCCGCGGSGCG-GSGC 48


>X17360-1|CAA35237.1|  255|Homo sapiens hox 5.1 protein protein.
          Length = 255

 Score = 30.7 bits (66), Expect = 4.2
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 6/89 (6%)

Query: 23  GGEECGLGSGCPSEQTHFPAEVTSAGLRSRENSIKEGSNVSCNFTFYQQGEIKFWFR--N 80
           GG     G  CP+     PA +  A   S+ +  +     +      Q   +  W +  +
Sbjct: 86  GGHYAAPGEPCPAPPAPPPAPLPGARAYSQSDPKQPPPGTALK----QPAVVYPWMKKVH 141

Query: 81  QNTVTPNFTYPEPQRVSIPWLRRNQLQLQ 109
            N+V PN+T  EP+R    + R+  L+L+
Sbjct: 142 VNSVNPNYTGGEPKRSRTAYTRQQVLELE 170


>BC099901-1|AAH99901.1| 1003|Homo sapiens G protein-coupled receptor
           64 protein.
          Length = 1003

 Score = 30.7 bits (66), Expect = 4.2
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 5/62 (8%)

Query: 31  SGCPSEQTHFPAEVTSAGLRSRENSIKEGSNVS-----CNFTFYQQGEIKFWFRNQNTVT 85
           +G P  +T    +VT + L S E  +K   N+      CN + + +GEI F +  ++TV 
Sbjct: 64  NGTPEVETTSLNDVTLSLLPSNETGVKPQRNICNLSSICNDSAFFRGEIMFQYDKESTVP 123

Query: 86  PN 87
            N
Sbjct: 124 QN 125


>AY143365-1|AAN38972.1| 1003|Homo sapiens HE6 heptahelical receptor
           splice variant 24 protein.
          Length = 1003

 Score = 30.7 bits (66), Expect = 4.2
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 5/62 (8%)

Query: 31  SGCPSEQTHFPAEVTSAGLRSRENSIKEGSNVS-----CNFTFYQQGEIKFWFRNQNTVT 85
           +G P  +T    +VT + L S E  +K   N+      CN + + +GEI F +  ++TV 
Sbjct: 64  NGTPEVETTSLNDVTLSLLPSNETGVKPQRNICNLSSICNDSAFFRGEIMFQYDKESTVP 123

Query: 86  PN 87
            N
Sbjct: 124 QN 125


>S83559-1|AAB50823.1|  134|Homo sapiens REV25-2 protein.
          Length = 134

 Score = 29.9 bits (64), Expect = 7.4
 Identities = 13/59 (22%), Positives = 29/59 (49%)

Query: 40  FPAEVTSAGLRSRENSIKEGSNVSCNFTFYQQGEIKFWFRNQNTVTPNFTYPEPQRVSI 98
           + A + + G+ +R +    G+  + N T  Q G++  +F  Q    P +T+ +  ++ I
Sbjct: 69  YGASIRATGISARFSGSGSGTEFTLNITSLQSGDLALYFCQQYGDWPPYTFGQGTKLEI 127


>U88965-1|AAC39932.1|  201|Homo sapiens unknown protein.
          Length = 201

 Score = 29.5 bits (63), Expect = 9.8
 Identities = 31/109 (28%), Positives = 40/109 (36%), Gaps = 9/109 (8%)

Query: 9   DLTCLGACSANCSAGGEECGLGSGCPSEQTHFPAEVTSAGLRSRENSIKEGSNV--SCNF 66
           D++C    SA    G E  GLG G               G + R   I   SNV  S ++
Sbjct: 58  DMSCHACLSAGTGLGEELVGLGPGSTCLVNICGCYFPVTGWQVRTTQIHLHSNVLQSSDY 117

Query: 67  TFYQQGE-------IKFWFRNQNTVTPNFTYPEPQRVSIPWLRRNQLQL 108
              QQGE        K      N V P+     P  VS+ +  R Q+ L
Sbjct: 118 VALQQGEGDIHEQVCKMHLMPANGVQPSIALVCPVSVSLSFDTRGQVSL 166


>AY143364-1|AAN38971.1|  979|Homo sapiens HE6 heptahelical receptor
           splice variant 21 protein.
          Length = 979

 Score = 29.5 bits (63), Expect = 9.8
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 5/52 (9%)

Query: 41  PAEVTSAGLRSRENSIKEGSNVS-----CNFTFYQQGEIKFWFRNQNTVTPN 87
           P +VT + L S E  +K   N+      CN + + +GEI F +  ++TV  N
Sbjct: 50  PPDVTLSLLPSNETGVKPQRNICNLSSICNDSAFFRGEIMFQYDKESTVPQN 101


>AL732578-3|CAI40670.1|  979|Homo sapiens G protein-coupled receptor
           64 protein.
          Length = 979

 Score = 29.5 bits (63), Expect = 9.8
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 5/52 (9%)

Query: 41  PAEVTSAGLRSRENSIKEGSNVS-----CNFTFYQQGEIKFWFRNQNTVTPN 87
           P +VT + L S E  +K   N+      CN + + +GEI F +  ++TV  N
Sbjct: 50  PPDVTLSLLPSNETGVKPQRNICNLSSICNDSAFFRGEIMFQYDKESTVPQN 101


>AL732509-5|CAI41677.1|  979|Homo sapiens G protein-coupled receptor
           64 protein.
          Length = 979

 Score = 29.5 bits (63), Expect = 9.8
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 5/52 (9%)

Query: 41  PAEVTSAGLRSRENSIKEGSNVS-----CNFTFYQQGEIKFWFRNQNTVTPN 87
           P +VT + L S E  +K   N+      CN + + +GEI F +  ++TV  N
Sbjct: 50  PPDVTLSLLPSNETGVKPQRNICNLSSICNDSAFFRGEIMFQYDKESTVPQN 101


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.318    0.133    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,276,993
Number of Sequences: 224733
Number of extensions: 1418615
Number of successful extensions: 2956
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2955
Number of HSP's gapped (non-prelim): 14
length of query: 222
length of database: 73,234,838
effective HSP length: 87
effective length of query: 135
effective length of database: 53,683,067
effective search space: 7247214045
effective search space used: 7247214045
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)