GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000210-TA|BGIBMGA000210-PA|undefined
         (222 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    31   0.14 
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual        26   3.8  
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    25   8.9  

>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 187 LLQTQPGDVTRGYSDDL-PPTDETELTYEVPLRDE 220
           L   QP +V + + DDL PP  + ++T +VP+ DE
Sbjct: 102 LSSNQPTNVYKQHQDDLAPPEADNQITRDVPISDE 136


>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 510

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 34  PSEQTHFPAEVTSAGLRSRENSIKEGSNVSCNFTFYQQGEI 74
           PS  T+ PA  + + L S  NS+   SN + N   Y Q  I
Sbjct: 348 PSLPTNVPANQSLSMLSSLSNSMSSTSNGALNSPSYSQAAI 388


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 65  NFTFYQQGEIKFWFRNQNT 83
           NF F +QG+++  FRN N+
Sbjct: 385 NFVFDEQGQLRSAFRNPNS 403


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.133    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,013,883
Number of Sequences: 5004
Number of extensions: 39478
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 66
Number of HSP's gapped (non-prelim): 3
length of query: 222
length of database: 2,362,478
effective HSP length: 70
effective length of query: 152
effective length of database: 2,012,198
effective search space: 305854096
effective search space used: 305854096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)