GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000210-TA|BGIBMGA000210-PA|undefined
         (222 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1138 + 24631919-24632248,24634100-24634502,24634788-246349...    28   5.3  
10_06_0060 + 10184165-10185002,10185084-10185167,10185262-10186334     28   7.0  
03_02_0827 + 11582974-11583027,11583210-11584358                       28   7.0  
01_06_0948 - 33242219-33242530,33242632-33242782,33242874-332431...    28   7.0  
05_06_0269 - 26818182-26820266                                         27   9.2  

>08_02_1138 +
           24631919-24632248,24634100-24634502,24634788-24634982,
           24635384-24635838,24636119-24636349,24636891-24637123,
           24637899-24637971
          Length = 639

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 3/42 (7%)

Query: 179 VMCSNPNRLLQTQPGDVTRGYSDDLPPTDETELTYEVPLRDE 220
           VM  N      T P     GYS  LPPTD  E     P RD+
Sbjct: 474 VMSGNKEAFEATSP---RHGYSSLLPPTDRNETDRRRPDRDD 512


>10_06_0060 +
          10184165-10185002,10185084-10185167,10185262-10186334
          Length = 664

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 3  TVKVIADLTCLGACSANCSAGGEECGLGSGCPSEQTHFPAEVTSAGLRSRENSIKEGSNV 62
          TV ++   T     +A+ S+    CG G  C      FP  + S+ + S  NS      +
Sbjct: 11 TVLLVLFATSAAQAAADRSSSSSSCGGGERCGDLLLPFPFHLNSSCVSSTTNS-SSRFRL 69

Query: 63 SCNFT 67
          SC+ T
Sbjct: 70 SCDTT 74


>03_02_0827 + 11582974-11583027,11583210-11584358
          Length = 400

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 6/45 (13%)

Query: 6   VIADLTCLGACSANC--SAGGEECGL----GSGCPSEQTHFPAEV 44
           ++A L   G C A      GGE  G     G GC ++Q H PA+V
Sbjct: 120 LLAVLKPFGHCDAGVRGGGGGERAGKHGGGGGGCGAQQHHSPAQV 164


>01_06_0948 -
           33242219-33242530,33242632-33242782,33242874-33243111,
           33243196-33243298,33243323-33243406,33243640-33243815,
           33243943-33244074,33248406-33248967,33249084-33249842
          Length = 838

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 7   IADLTCLGACSANCSAGGEECGLGSGC 33
           + + +C    SAN S GG   G G+GC
Sbjct: 385 LMNCSCTAYASANVSGGGRGHGAGTGC 411


>05_06_0269 - 26818182-26820266
          Length = 694

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/23 (43%), Positives = 17/23 (73%)

Query: 199 YSDDLPPTDETELTYEVPLRDES 221
           + D+ PP+DE++LT E+  R +S
Sbjct: 543 FEDEKPPSDESDLTREIHRRAQS 565


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.133    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,889,576
Number of Sequences: 37544
Number of extensions: 278452
Number of successful extensions: 627
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 624
Number of HSP's gapped (non-prelim): 6
length of query: 222
length of database: 14,793,348
effective HSP length: 79
effective length of query: 143
effective length of database: 11,827,372
effective search space: 1691314196
effective search space used: 1691314196
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)