GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000210-TA|BGIBMGA000210-PA|undefined
         (222 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53149-1|AAD31546.1|  328|Caenorhabditis elegans Prion-like-(q/n...    35   0.053
AF016656-4|AAB66039.3|  429|Caenorhabditis elegans Hypothetical ...    31   0.66 
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z81546-3|CAB04451.1|  321|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z11126-7|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AL110500-6|CAB60429.1|  629|Caenorhabditis elegans Hypothetical ...    27   8.1  

>U53149-1|AAD31546.1|  328|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 16
           protein.
          Length = 328

 Score = 34.7 bits (76), Expect = 0.053
 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 5/81 (6%)

Query: 3   TVKVIADLTCLGACSANCSAGGEECGLGSGCPSEQTHFPAEVTSAGLRSRENSIKEGSNV 62
           T+   AD  C+  C A C A    CG+ +G   +Q+  PA  T A +  R       SN 
Sbjct: 102 TIANNADTNCISQCQAKCQA---RCGIQNGMGFQQS--PATTTDAPIVIRLEITSGSSNS 156

Query: 63  SCNFTFYQQGEIKFWFRNQNT 83
            C     QQ   +   +NQ T
Sbjct: 157 QCAPKCIQQCNNQCASQNQKT 177


>AF016656-4|AAB66039.3|  429|Caenorhabditis elegans Hypothetical
           protein C35A11.1 protein.
          Length = 429

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 74  IKFWFRNQNTVTPNFTYPEPQRVSIPWLRRNQLQLQLTALWFK-CVSGVHRLLLRLAGLQ 132
           I F  R  N+ TP FT+   Q   + W     + L  T+LW    ++ + R+ LR+  L 
Sbjct: 90  IHFVLRRNNSCTPTFTHSWLQ--FLLWHVVLSITLHTTSLWLAVAMAFIRRMTLRVTALN 147

Query: 133 ISW 135
             W
Sbjct: 148 SQW 150


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 2/24 (8%)

Query: 12   CLGACSANCSAGGEECGLGSGCPS 35
            C G C   CS GG  C  G GC S
Sbjct: 2130 CGGGCGGGCSGGGNSC--GGGCNS 2151


>Z81546-3|CAB04451.1|  321|Caenorhabditis elegans Hypothetical
           protein F53A2.3 protein.
          Length = 321

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/43 (37%), Positives = 20/43 (46%)

Query: 58  EGSNVSCNFTFYQQGEIKFWFRNQNTVTPNFTYPEPQRVSIPW 100
           E +N + + TF  Q EIK      N V  N T P+ Q  S  W
Sbjct: 29  EAANSNGSSTFQDQSEIKIEHIAPNLVFENGTVPQEQSNSFQW 71


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
          protein ZK643.8 protein.
          Length = 774

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/18 (50%), Positives = 9/18 (50%)

Query: 16 CSANCSAGGEECGLGSGC 33
          C   C  GG  CG G GC
Sbjct: 55 CGGGCGGGGGGCGGGGGC 72


>Z11126-7|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
          protein ZK643.8 protein.
          Length = 774

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/18 (50%), Positives = 9/18 (50%)

Query: 16 CSANCSAGGEECGLGSGC 33
          C   C  GG  CG G GC
Sbjct: 55 CGGGCGGGGGGCGGGGGC 72


>AL110500-6|CAB60429.1|  629|Caenorhabditis elegans Hypothetical
           protein Y87G2A.6 protein.
          Length = 629

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 154 HRTWRRRLELEKKIKEDQASPGNYSVMC--SNPNRLLQTQP 192
           H  W RRL  EK++ +D+ +   Y+ +C   + N LL   P
Sbjct: 306 HMEWSRRLASEKEMDKDKKNSLKYTKICFDQSGNFLLYPTP 346


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.133    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,711,217
Number of Sequences: 27539
Number of extensions: 231690
Number of successful extensions: 558
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 539
Number of HSP's gapped (non-prelim): 22
length of query: 222
length of database: 12,573,161
effective HSP length: 79
effective length of query: 143
effective length of database: 10,397,580
effective search space: 1486853940
effective search space used: 1486853940
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)