Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000209-TA|BGIBMGA000209-PA|IPR002212|Matrix
fibril-associated, IPR013091|EGF calcium-binding, IPR009030|Growth
factor, receptor, IPR000152|Aspartic acid and asparagine hydroxylation
site, IPR013032|EGF-like region, IPR000742|EGF-like, type 3,
IPR001881|EGF-like calcium-binding, IPR006210|EGF,
IPR001491|Thrombomodulin
         (860 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    32   0.017
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    31   0.052
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    31   0.052
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    27   0.65 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   2.6  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    25   2.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   8.0  

>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 32.3 bits (70), Expect = 0.017
 Identities = 12/20 (60%), Positives = 13/20 (65%)

Query: 451 CECPDGYVLAPDGLSCVDAD 470
           C CPDG  L  DGL CV+ D
Sbjct: 62  CACPDGLKLLSDGLMCVEKD 81



 Score = 24.2 bits (50), Expect = 4.6
 Identities = 9/30 (30%), Positives = 16/30 (53%)

Query: 523 RCHNTAGSFRCTCPYGYAVAADGVHCRDID 552
           R ++ +    C CP G  + +DG+ C + D
Sbjct: 52  RINSKSPLLSCACPDGLKLLSDGLMCVEKD 81


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 30.7 bits (66), Expect = 0.052
 Identities = 12/26 (46%), Positives = 14/26 (53%)

Query: 451 CECPDGYVLAPDGLSCVDADECALDP 476
           C CPDG  L  DGL CV+     + P
Sbjct: 62  CACPDGLKLLSDGLMCVEKVSTTIVP 87



 Score = 23.4 bits (48), Expect = 8.0
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 523 RCHNTAGSFRCTCPYGYAVAADGVHC 548
           R ++ +    C CP G  + +DG+ C
Sbjct: 52  RINSKSPLLSCACPDGLKLLSDGLMC 77


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 30.7 bits (66), Expect = 0.052
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 8/56 (14%)

Query: 804 CLCRTGYELDEDGANCRDVD----ECERDTHTCQQICSNTE----GSYECSCEDGY 851
           C C+ GY+ D +   C +      + E  +H+C+   ++++    G  EC C+ GY
Sbjct: 247 CHCKPGYQADVEKQECTECPIGKFKHEAGSHSCEACPAHSKSSDYGFTECRCDPGY 302



 Score = 29.5 bits (63), Expect = 0.12
 Identities = 21/80 (26%), Positives = 29/80 (36%), Gaps = 9/80 (11%)

Query: 135 CRCPPGYRLTPSLDECEDV------DECGDQ--RICDHGDCRNTIGSYRCECKPGYTLRE 186
           C C PGY+      EC +        E G      C      +  G   C C PGY   E
Sbjct: 247 CHCKPGYQADVEKQECTECPIGKFKHEAGSHSCEACPAHSKSSDYGFTECRCDPGYFRAE 306

Query: 187 NVCRDVDECSRPRPVCRNGT 206
              + +  C++P    +N T
Sbjct: 307 KDPKKM-PCTQPPSAPQNLT 325



 Score = 28.3 bits (60), Expect = 0.28
 Identities = 25/74 (33%), Positives = 28/74 (37%), Gaps = 13/74 (17%)

Query: 77  LCKPGTCHDTPTGFQCGCDHGYEHDNTSHLCRDVDECSWGRPPCR-GMAQCVNLP----- 130
           LCK       P+G  C C  GY+ D     C    EC  G+     G   C   P     
Sbjct: 233 LCKGDGKWYLPSG-GCHCKPGYQADVEKQECT---ECPIGKFKHEAGSHSCEACPAHSKS 288

Query: 131 ---GAFECRCPPGY 141
              G  ECRC PGY
Sbjct: 289 SDYGFTECRCDPGY 302



 Score = 26.6 bits (56), Expect = 0.85
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 6/57 (10%)

Query: 257 CECAPGYTLTADGRNCRDVDECDELPHPCGRDGNPSC-----TNTNGGYECSCGAGW 308
           C C PGY    + + C +     +  H  G     +C     ++  G  EC C  G+
Sbjct: 247 CHCKPGYQADVEKQECTEC-PIGKFKHEAGSHSCEACPAHSKSSDYGFTECRCDPGY 302



 Score = 23.4 bits (48), Expect = 8.0
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 11/68 (16%)

Query: 165 GDCRNTIGSYRCECKPGYTLRENVCRDVDEC--SRPRPVCRNGTCENLP--------GAY 214
           GD +  + S  C CKPGY   +   ++  EC   + +    + +CE  P        G  
Sbjct: 236 GDGKWYLPSGGCHCKPGYQ-ADVEKQECTECPIGKFKHEAGSHSCEACPAHSKSSDYGFT 294

Query: 215 LCHCDDGF 222
            C CD G+
Sbjct: 295 ECRCDPGY 302


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 27.1 bits (57), Expect = 0.65
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 327 VCAGGECRNFNGGYVCECPAGWRFDKTAAVCVDERKELCYD 367
           VC G  C+N  GG V E  +G     T  V + + K L YD
Sbjct: 9   VCLGIACQNIRGGVVRENSSGKNLTNTLNV-IHKWKYLDYD 48


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 66  KPIDECDIMPQLCKPGTCHDTPTGF 90
           K I +   MP L +P +CH TP  F
Sbjct: 643 KRIRKMPSMPLLPRPISCHTTPDSF 667


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 11/51 (21%), Positives = 19/51 (37%)

Query: 804 CLCRTGYELDEDGANCRDVDECERDTHTCQQICSNTEGSYECSCEDGYEKR 854
           CLC         G NC      + D  T +    +++G +  S +   + R
Sbjct: 3   CLCECDLATPRTGTNCSSGSSSDSDGQTDEGFVGDSQGFFRRSIQQKIQYR 53


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 8.0
 Identities = 19/74 (25%), Positives = 22/74 (29%), Gaps = 2/74 (2%)

Query: 549 RDIDECVQEPRVCPHACENVVGSYI--CKCPEGYRRTSAPQDSENACEDINECEEQEDLC 606
           R ID C  +       CE    S I  C C     R   P  + N     N CE     C
Sbjct: 77  RSIDPCASKYCGIGKECELSPNSTIAVCVCMRKCPRRHRPVCASNGKIYANHCELHRAAC 136

Query: 607 SGGVCINTDGSFLC 620
             G  +       C
Sbjct: 137 HSGSSLTKSRLMRC 150


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.141    0.504 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 296,242
Number of Sequences: 429
Number of extensions: 14260
Number of successful extensions: 32
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 16
length of query: 860
length of database: 140,377
effective HSP length: 64
effective length of query: 796
effective length of database: 112,921
effective search space: 89885116
effective search space used: 89885116
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)