GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000209-TA|BGIBMGA000209-PA|IPR002212|Matrix
fibril-associated, IPR013091|EGF calcium-binding, IPR009030|Growth
factor, receptor, IPR000152|Aspartic acid and asparagine hydroxylation
site, IPR013032|EGF-like region, IPR000742|EGF-like, type 3,
IPR001881|EGF-like calcium-binding, IPR006210|EGF,
IPR001491|Thrombomodulin
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    33   0.22 
SPCC1450.13c |||riboflavin synthase |Schizosaccharomyces pombe|c...    30   1.6  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    29   2.1  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    27   8.4  

>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1466

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 83   CHDTPTGFQCGCDHGYEHDNTSHLCRDVDECSWGRPPCRGMAQCVNLPGAFECRCPPGYR 142
            C  T   F+C  ++    D T  L   +      +PP     QC ++  AFE R P GY+
Sbjct: 1274 CECTRADFECDYNYRRLKDGTCVLVSGL------QPPDTREEQC-SVDDAFEWRQPTGYK 1326

Query: 143  LTPSLDECE 151
             TP L ECE
Sbjct: 1327 RTP-LTECE 1334


>SPCC1450.13c |||riboflavin synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 208

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 13/103 (12%)

Query: 425 QDLDECRVRPDVCVGGRCVNTDGSFRCECPDGYVLAPDGLSCVDADEC-ALDPRICGNGT 483
           Q LD+C     + V G C+      R     G  +AP+ L   +  +C A DP       
Sbjct: 31  QILDDCHTGDSIAVNGTCLTVTDFDRYHFTVG--IAPESLRLTNLGQCKAGDPVNLERAV 88

Query: 484 CSNTR-GGYECQCSPGFTQGPDQTCVD-VDECAEGRA-SCTFR 523
            S+TR GG+       F QG   T  + V++  +G A   TFR
Sbjct: 89  LSSTRMGGH-------FVQGHVDTVAEIVEKKQDGEAIDFTFR 124


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 7/87 (8%)

Query: 456 GYVLAPDGLSCVDADECALDPRICGNGTC---SNTRGGYECQCSPGFTQGPDQTCVDVD- 511
           G  L  +G +C     C +DPR  G   C   S    G  C C  GF QG     V VD 
Sbjct: 278 GLALECEGDTCSGLP-CYVDPRENGVQGCPEGSPIGAGGACFCVVGFQQGTTAKIVVVDY 336

Query: 512 --ECAEGRASCTFRCHNTAGSFRCTCP 536
             E A   +S +    ++A S   T P
Sbjct: 337 SEEMASSSSSASATATSSAESSIATSP 363


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/37 (35%), Positives = 16/37 (43%)

Query: 560 VCPHACENVVGSYICKCPEGYRRTSAPQDSENACEDI 596
           VC H  EN   S +   P G+R    P  S   C D+
Sbjct: 352 VCKHRRENPPISILGTVPSGFRDMGVPVISRKLCADL 388


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.141    0.504 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,370,442
Number of Sequences: 5004
Number of extensions: 195636
Number of successful extensions: 218
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 217
Number of HSP's gapped (non-prelim): 5
length of query: 860
length of database: 2,362,478
effective HSP length: 79
effective length of query: 781
effective length of database: 1,967,162
effective search space: 1536353522
effective search space used: 1536353522
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)