Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000208-TA|BGIBMGA000208-PA|IPR013091|EGF
calcium-binding, IPR002212|Matrix fibril-associated,
IPR000152|Aspartic acid and asparagine hydroxylation site,
IPR013032|EGF-like region, IPR000742|EGF-like, type 3,
IPR001881|EGF-like calcium-binding, IPR006210|EGF
         (229 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    25   0.44 
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    25   0.44 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.4  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   5.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.5  

>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
          protein.
          Length = 157

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 31 TCRCPPNYELVSDGTACYD 49
          +C CP   +L+SDG  C +
Sbjct: 61 SCACPDGLKLLSDGLMCVE 79


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
          protein.
          Length = 128

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 31 TCRCPPNYELVSDGTACYD 49
          +C CP   +L+SDG  C +
Sbjct: 61 SCACPDGLKLLSDGLMCVE 79


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 121 EPPSYVVTLADIDECAAHEGLCAHGTCTN--TFGSFVC 156
           +P  YV  +A  + C   E LC H   T+  T  +F C
Sbjct: 422 KPFVYVREIAFSESCLPEEILCPHFNVTDGETTKTFCC 459


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 202 GYVAMPNGSQYLLQNLSTNMRLKIQFFL 229
           GY A+  G Q   +N+ T+ + K+ F L
Sbjct: 289 GYHAIAGGQQRPDENVVTDKKSKVNFAL 316


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/44 (22%), Positives = 18/44 (40%)

Query: 185 PGVCRNLPGSYVCLCPEGYVAMPNGSQYLLQNLSTNMRLKIQFF 228
           P  CR   G Y  + P+   A+       L N+  +  +K + +
Sbjct: 22  PHTCRTKNGDYTKIMPDILTAIGQTPLIKLNNIPKSYGIKCEIY 65


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 21  GQCINTQGSYTCRCPPNYELVSD 43
           G    T  + T  CPPN  L S+
Sbjct: 299 GPTQTTLNATTLFCPPNLRLTSE 321


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 21  GQCINTQGSYTCRCPPNYELVSD 43
           G    T  + T  CPPN  L S+
Sbjct: 389 GPTQTTLNATTLFCPPNLRLTSE 411


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.138    0.480 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,859
Number of Sequences: 429
Number of extensions: 3216
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 7
length of query: 229
length of database: 140,377
effective HSP length: 56
effective length of query: 173
effective length of database: 116,353
effective search space: 20129069
effective search space used: 20129069
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)