BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA000208-TA|BGIBMGA000208-PA|IPR013091|EGF calcium-binding, IPR002212|Matrix fibril-associated, IPR000152|Aspartic acid and asparagine hydroxylation site, IPR013032|EGF-like region, IPR000742|EGF-like, type 3, IPR001881|EGF-like calcium-binding, IPR006210|EGF (229 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 26 5.3 >SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual Length = 1339 Score = 25.8 bits (54), Expect = 5.3 Identities = 12/29 (41%), Positives = 15/29 (51%) Query: 48 YDSRKARCYGKVDLRSGTETCRDSDELSE 76 YD + CY D+ + T T DSD SE Sbjct: 955 YDMMQQFCYSNSDINNQTSTFVDSDVESE 983 Database: spombe Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.321 0.138 0.480 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,123,688 Number of Sequences: 5004 Number of extensions: 45012 Number of successful extensions: 61 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60 Number of HSP's gapped (non-prelim): 1 length of query: 229 length of database: 2,362,478 effective HSP length: 70 effective length of query: 159 effective length of database: 2,012,198 effective search space: 319939482 effective search space used: 319939482 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.8 bits) S2: 52 (25.0 bits)
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