GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000207-TA|BGIBMGA000207-PA|IPR002212|Matrix
fibril-associated, IPR006209|EGF-like, IPR013091|EGF calcium-binding,
IPR009030|Growth factor, receptor, IPR000152|Aspartic acid and
asparagine hydroxylation site, IPR013032|EGF-like region,
IPR000742|EGF-like, type 3, IPR001881|EGF-like calcium-binding,
IPR006210|EGF
         (568 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    36   9e-04
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    24   2.9  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 35.9 bits (79), Expect = 9e-04
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 12/57 (21%)

Query: 172 GDGDCHNTEGSFTCHCRPGYKADDFSKICVDIDECADNDALCRGGRCVNTAGSFRCE 228
           GDG  +   G   CHC+PGY+AD      V+  EC +    C  G+  + AGS  CE
Sbjct: 236 GDGKWYLPSGG--CHCKPGYQAD------VEKQECTE----CPIGKFKHEAGSHSCE 280



 Score = 28.3 bits (60), Expect = 0.18
 Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 16/75 (21%)

Query: 128 LC-GHGRCRNLLGGFTCDCFPGYEKDSKNHTCVDVNECEI--VDGVCGDGDCH------- 177
           LC G G+     GG  C C PGY+ D +   C    EC I       G   C        
Sbjct: 233 LCKGDGKWYLPSGG--CHCKPGYQADVEKQEC---TECPIGKFKHEAGSHSCEACPAHSK 287

Query: 178 NTEGSFT-CHCRPGY 191
           +++  FT C C PGY
Sbjct: 288 SSDYGFTECRCDPGY 302



 Score = 26.2 bits (55), Expect = 0.73
 Identities = 16/59 (27%), Positives = 22/59 (37%)

Query: 501 CLCDTGYKGDGYGLRTVCCVYSCVDIDECANDPTLCENGHCSNTPGGYECDCDVGFTRA 559
           C C  GY+ D        C       +  ++    C     S+  G  EC CD G+ RA
Sbjct: 247 CHCKPGYQADVEKQECTECPIGKFKHEAGSHSCEACPAHSKSSDYGFTECRCDPGYFRA 305


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 11/32 (34%), Positives = 14/32 (43%)

Query: 227 CECGHGMELAPDRLSCKDIDECSITSGICSNG 258
           C C  G++L  D L C + D      G   NG
Sbjct: 62  CACPDGLKLLSDGLMCVEKDSIHSIDGDEENG 93



 Score = 23.0 bits (47), Expect = 6.8
 Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 6/39 (15%)

Query: 297 CQHSCVNTPGS------YHCTCREGWHLRADGRSCRDID 329
           C H C+  P          C C +G  L +DG  C + D
Sbjct: 43  CSHLCLPAPRINSKSPLLSCACPDGLKLLSDGLMCVEKD 81


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.140    0.494 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,384
Number of Sequences: 429
Number of extensions: 7888
Number of successful extensions: 20
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 6
length of query: 568
length of database: 140,377
effective HSP length: 61
effective length of query: 507
effective length of database: 114,208
effective search space: 57903456
effective search space used: 57903456
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)