Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000206-TA|BGIBMGA000206-PA|IPR013091|EGF
calcium-binding, IPR002212|Matrix fibril-associated,
IPR006209|EGF-like, IPR009030|Growth factor, receptor,
IPR000152|Aspartic acid and asparagine hydroxylation site,
IPR013032|EGF-like region, IPR000742|EGF-like, type 3,
IPR001881|EGF-like calcium-binding, IPR006210|EGF
         (453 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    27   4.1  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    27   7.1  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    27   7.1  
SPBC530.09c |||cation dependent mannose-6-phosphate cargo recept...    26   9.4  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    26   9.4  

>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 5/47 (10%)

Query: 80  VDECAADSMCKGGRCVNSEGSFQCVCEAGYRPTATRGACVDVDECEE 126
           VDEC +++        N EG F C+C+  Y P    G       CE+
Sbjct: 105 VDECGSENDYNH----NFEGRF-CICDTVYNPETEEGTMFQCILCED 146


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 250 AGGQCRNTAGSFTCVCPEGTRHEPELQLCRDIDECEGETET 290
           A    R+ AG FTC C  GT+ +   ++ +   EC    ET
Sbjct: 11  ASKTARDIAGCFTCQC--GTQFDNVERIVQHFKECRYRDET 49


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 250 AGGQCRNTAGSFTCVCPEGTRHEPELQLCRDIDECEGETET 290
           A    R+ AG FTC C  GT+ +   ++ +   EC    ET
Sbjct: 11  ASKTARDIAGCFTCQC--GTQFDNVERIVQHFKECRYRDET 49


>SPBC530.09c |||cation dependent mannose-6-phosphate cargo receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 44  DNPRVCRRGRC--RNTAGSYTCLCEPGFAPTAAGYCADVDECA 84
           DN  +C +      +T  S+TC  +P  AP+   Y  ++++CA
Sbjct: 142 DNGSLCPKSNHIRMSTLISFTCNRDPYTAPSVITYVGNLNDCA 184


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 59  GSY-TCLCEPGFAPTAAGYCADVD-ECAADSMCKGGRCVNSEGSFQCVCEAG 108
           G+Y +  C PG   T        D E     +CKGG+   +  ++  +CE G
Sbjct: 206 GAYCSYACSPGMLKTQWPSTQPSDGETRGGLLCKGGKLYRTNTAYDNLCENG 257


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.140    0.485 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,233,353
Number of Sequences: 5004
Number of extensions: 94244
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 113
Number of HSP's gapped (non-prelim): 8
length of query: 453
length of database: 2,362,478
effective HSP length: 75
effective length of query: 378
effective length of database: 1,987,178
effective search space: 751153284
effective search space used: 751153284
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)