GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000206-TA|BGIBMGA000206-PA|IPR013091|EGF
calcium-binding, IPR002212|Matrix fibril-associated,
IPR006209|EGF-like, IPR009030|Growth factor, receptor,
IPR000152|Aspartic acid and asparagine hydroxylation site,
IPR013032|EGF-like region, IPR000742|EGF-like, type 3,
IPR001881|EGF-like calcium-binding, IPR006210|EGF
         (453 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    31   0.026
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.99 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   2.3  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    24   3.0  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    24   3.0  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 30.7 bits (66), Expect = 0.026
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 12/69 (17%)

Query: 88  MCKG-GRCVNSEGSFQCVCEAGYRPTATRGACVDVDECEEQRVCRNGRCHNTPGSFRCEC 146
           +CKG G+     G   C C+ GY+      A V+  EC E   C  G+  +  GS  CE 
Sbjct: 233 LCKGDGKWYLPSGG--CHCKPGYQ------ADVEKQECTE---CPIGKFKHEAGSHSCEA 281

Query: 147 LPGFTLSND 155
            P  + S+D
Sbjct: 282 CPAHSKSSD 290



 Score = 27.9 bits (59), Expect = 0.19
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 10/53 (18%)

Query: 21  CICKPGYESGSEGALCRDVDECRDNPRVCRRGRCRNTAGSYTCLCEPGFAPTA 73
           C CKPGY++  E   C +          C  G+ ++ AGS++C   P  + ++
Sbjct: 247 CHCKPGYQADVEKQECTE----------CPIGKFKHEAGSHSCEACPAHSKSS 289



 Score = 27.1 bits (57), Expect = 0.32
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 10/50 (20%)

Query: 218 PGYRCICDPGYHPDADGLCRDIDECDMHQSYCAGGQCRNTAGSFTC-VCP 266
           P   C C PGY  D +       EC    + C  G+ ++ AGS +C  CP
Sbjct: 243 PSGGCHCKPGYQADVEK-----QEC----TECPIGKFKHEAGSHSCEACP 283



 Score = 25.4 bits (53), Expect = 0.99
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 8/45 (17%)

Query: 185 CPEGPSKDNGGADINECTAVPGACPHGSCENLEPGY-RCICDPGY 228
           CP G  K   G+  + C A    CP  S ++ + G+  C CDPGY
Sbjct: 265 CPIGKFKHEAGS--HSCEA----CPAHS-KSSDYGFTECRCDPGY 302



 Score = 24.6 bits (51), Expect = 1.7
 Identities = 11/35 (31%), Positives = 13/35 (37%)

Query: 330 CECELGYVLDATAQRCLDNRRGSCWRRVVDGQCEA 364
           C C+ GY  D   Q C +   G          CEA
Sbjct: 247 CHCKPGYQADVEKQECTECPIGKFKHEAGSHSCEA 281


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 0.99
 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 56  NTAGSYTCLCEPGFAPTAAGYCADVDECAADSMCKGG-RCVN 96
           +TA S   LC       A  +C D D C  +  C  G +C N
Sbjct: 728 STARSEQFLCRYEAHCFALCHCCDFDACDCEMTCPAGCKCYN 769



 Score = 23.4 bits (48), Expect = 4.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 236 CRDIDECDMHQSYCAGGQCRN 256
           C D D CD   +  AG +C N
Sbjct: 749 CCDFDACDCEMTCPAGCKCYN 769


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)

Query: 145 ECLPGFTLSNDGRT 158
           +C PGFT++  G+T
Sbjct: 809 QCCPGFTMTKSGKT 822


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 5/43 (11%)

Query: 198 INECTAVPGACPH-----GSCENLEPGYRCICDPGYHPDADGL 235
           +N+C AV G C H         +  P   C C  G    +DGL
Sbjct: 33  MNQCQAVNGHCSHLCLPAPRINSKSPLLSCACPDGLKLLSDGL 75


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 5/43 (11%)

Query: 198 INECTAVPGACPH-----GSCENLEPGYRCICDPGYHPDADGL 235
           +N+C AV G C H         +  P   C C  G    +DGL
Sbjct: 33  MNQCQAVNGHCSHLCLPAPRINSKSPLLSCACPDGLKLLSDGL 75


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.140    0.485 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,354
Number of Sequences: 429
Number of extensions: 6502
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 10
length of query: 453
length of database: 140,377
effective HSP length: 60
effective length of query: 393
effective length of database: 114,637
effective search space: 45052341
effective search space used: 45052341
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)