Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000205-TA|BGIBMGA000205-PA|undefined
         (711 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    30   0.063
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    30   0.063
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    26   0.77 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   2.4  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    24   4.1  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   5.5  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    23   7.2  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   9.5  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 29.9 bits (64), Expect = 0.063
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 152 QYTDNSSESASTADPEDEISTAWTETVPYTDTSSESPSIADPEEEISTAWAETVQYTDTS 211
           Q   NS +S S+A   D +ST    T  Y  TS  +  +  P+E I+ +W E   + + S
Sbjct: 15  QINGNSGDSTSSATSID-LSTFRVPT--YGTTSHPTSKLVPPDERITYSWTEINAFANVS 71



 Score = 27.9 bits (59), Expect = 0.25
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 449 QYTDTSSESPSTADLEEDISTAWAETVHYTDTSSQSPSKTDPEEEISTAWTETVQYTDAS 508
           Q    S +S S+A    D+ST    T  Y  TS  +     P+E I+ +WTE   + + S
Sbjct: 15  QINGNSGDSTSSAT-SIDLSTFRVPT--YGTTSHPTSKLVPPDERITYSWTEINAFANVS 71



 Score = 27.5 bits (58), Expect = 0.34
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 67  TETVP-YTDTSSESPSTVDPEEELSTAWTETVQYADAS 103
           T  VP Y  TS  +   V P+E ++ +WTE   +A+ S
Sbjct: 34  TFRVPTYGTTSHPTSKLVPPDERITYSWTEINAFANVS 71



 Score = 27.1 bits (57), Expect = 0.44
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 383 EDEISTAWTETVPYTDTSSESPSTADLEEDISTAWAETVHYTDTSSQSPSKTDPEEEIST 442
           E+E     +  V   + +S   +++    D+ST    T  Y  TS  +     P+E I+ 
Sbjct: 2   ENETEPLLSGVVSQINGNSGDSTSSATSIDLSTFRVPT--YGTTSHPTSKLVPPDERITY 59

Query: 443 AWTETVQYTDTS 454
           +WTE   + + S
Sbjct: 60  SWTEINAFANVS 71



 Score = 26.2 bits (55), Expect = 0.77
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 337 TETVP-YTDTSSESPSIADPEEEISTAWTETVQYTDAS 373
           T  VP Y  TS  +  +  P+E I+ +WTE   + + S
Sbjct: 34  TFRVPTYGTTSHPTSKLVPPDERITYSWTEINAFANVS 71



 Score = 25.8 bits (54), Expect = 1.0
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 247 LEEEISTAWAETVHYTDTSSQSPSKTDPEEEISTAWTETVPYTDTSSESPSIADPEEEIS 306
           +E E     +  V   + +S   + +    ++ST    T  Y  TS  +  +  P+E I+
Sbjct: 1   MENETEPLLSGVVSQINGNSGDSTSSATSIDLSTFRVPT--YGTTSHPTSKLVPPDERIT 58

Query: 307 TAWTE 311
            +WTE
Sbjct: 59  YSWTE 63



 Score = 24.6 bits (51), Expect = 2.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 126 YTDTSSESPSIADPEEEISTAWTE 149
           Y  TS  +  +  P+E I+ +WTE
Sbjct: 40  YGTTSHPTSKLVPPDERITYSWTE 63



 Score = 24.2 bits (50), Expect = 3.1
 Identities = 11/55 (20%), Positives = 22/55 (40%)

Query: 481 SSQSPSKTDPEEEISTAWTETVQYTDASSESASIADPEDEISTAWTETVPYTDTS 535
           +  S   T     I  +      Y   S  ++ +  P++ I+ +WTE   + + S
Sbjct: 17  NGNSGDSTSSATSIDLSTFRVPTYGTTSHPTSKLVPPDERITYSWTEINAFANVS 71



 Score = 24.2 bits (50), Expect = 3.1
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 261 YTDTSSQSPSKTDPEEEISTAWTETVPYTDTS 292
           Y  TS  +     P+E I+ +WTE   + + S
Sbjct: 40  YGTTSHPTSKLVPPDERITYSWTEINAFANVS 71



 Score = 23.4 bits (48), Expect = 5.5
 Identities = 8/32 (25%), Positives = 17/32 (53%)

Query: 369 YTDASSESASIADPEDEISTAWTETVPYTDTS 400
           Y   S  ++ +  P++ I+ +WTE   + + S
Sbjct: 40  YGTTSHPTSKLVPPDERITYSWTEINAFANVS 71


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 29.9 bits (64), Expect = 0.063
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 152 QYTDNSSESASTADPEDEISTAWTETVPYTDTSSESPSIADPEEEISTAWAETVQYTDTS 211
           Q   NS +S S+A   D +ST    T  Y  TS  +  +  P+E I+ +W E   + + S
Sbjct: 15  QINGNSGDSTSSATSID-LSTFRVPT--YGTTSHPTSKLVPPDERITYSWTEINAFANVS 71



 Score = 27.9 bits (59), Expect = 0.25
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 449 QYTDTSSESPSTADLEEDISTAWAETVHYTDTSSQSPSKTDPEEEISTAWTETVQYTDAS 508
           Q    S +S S+A    D+ST    T  Y  TS  +     P+E I+ +WTE   + + S
Sbjct: 15  QINGNSGDSTSSAT-SIDLSTFRVPT--YGTTSHPTSKLVPPDERITYSWTEINAFANVS 71



 Score = 27.5 bits (58), Expect = 0.34
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 67  TETVP-YTDTSSESPSTVDPEEELSTAWTETVQYADAS 103
           T  VP Y  TS  +   V P+E ++ +WTE   +A+ S
Sbjct: 34  TFRVPTYGTTSHPTSKLVPPDERITYSWTEINAFANVS 71



 Score = 27.1 bits (57), Expect = 0.44
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 383 EDEISTAWTETVPYTDTSSESPSTADLEEDISTAWAETVHYTDTSSQSPSKTDPEEEIST 442
           E+E     +  V   + +S   +++    D+ST    T  Y  TS  +     P+E I+ 
Sbjct: 2   ENETEPLLSGVVSQINGNSGDSTSSATSIDLSTFRVPT--YGTTSHPTSKLVPPDERITY 59

Query: 443 AWTETVQYTDTS 454
           +WTE   + + S
Sbjct: 60  SWTEINAFANVS 71



 Score = 26.2 bits (55), Expect = 0.77
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 337 TETVP-YTDTSSESPSIADPEEEISTAWTETVQYTDAS 373
           T  VP Y  TS  +  +  P+E I+ +WTE   + + S
Sbjct: 34  TFRVPTYGTTSHPTSKLVPPDERITYSWTEINAFANVS 71



 Score = 25.8 bits (54), Expect = 1.0
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 247 LEEEISTAWAETVHYTDTSSQSPSKTDPEEEISTAWTETVPYTDTSSESPSIADPEEEIS 306
           +E E     +  V   + +S   + +    ++ST    T  Y  TS  +  +  P+E I+
Sbjct: 1   MENETEPLLSGVVSQINGNSGDSTSSATSIDLSTFRVPT--YGTTSHPTSKLVPPDERIT 58

Query: 307 TAWTE 311
            +WTE
Sbjct: 59  YSWTE 63



 Score = 24.6 bits (51), Expect = 2.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 126 YTDTSSESPSIADPEEEISTAWTE 149
           Y  TS  +  +  P+E I+ +WTE
Sbjct: 40  YGTTSHPTSKLVPPDERITYSWTE 63



 Score = 24.2 bits (50), Expect = 3.1
 Identities = 11/55 (20%), Positives = 22/55 (40%)

Query: 481 SSQSPSKTDPEEEISTAWTETVQYTDASSESASIADPEDEISTAWTETVPYTDTS 535
           +  S   T     I  +      Y   S  ++ +  P++ I+ +WTE   + + S
Sbjct: 17  NGNSGDSTSSATSIDLSTFRVPTYGTTSHPTSKLVPPDERITYSWTEINAFANVS 71



 Score = 24.2 bits (50), Expect = 3.1
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 261 YTDTSSQSPSKTDPEEEISTAWTETVPYTDTS 292
           Y  TS  +     P+E I+ +WTE   + + S
Sbjct: 40  YGTTSHPTSKLVPPDERITYSWTEINAFANVS 71



 Score = 23.4 bits (48), Expect = 5.5
 Identities = 8/32 (25%), Positives = 17/32 (53%)

Query: 369 YTDASSESASIADPEDEISTAWTETVPYTDTS 400
           Y   S  ++ +  P++ I+ +WTE   + + S
Sbjct: 40  YGTTSHPTSKLVPPDERITYSWTEINAFANVS 71


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 26.2 bits (55), Expect = 0.77
 Identities = 10/41 (24%), Positives = 22/41 (53%)

Query: 265 SSQSPSKTDPEEEISTAWTETVPYTDTSSESPSIADPEEEI 305
           ++  P +  PE+  ST    T   T  +  +P++++P+ E+
Sbjct: 429 TTPKPGQWVPEKSTSTTQRTTTVSTTEAPPAPAVSNPQNEV 469



 Score = 25.4 bits (53), Expect = 1.4
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 127 TDTSSESPSIADPEEEISTAWTETVQYTDNSSESASTADPEDEISTAWTETVPYTDTSSE 186
           T +++  P  A P    S   ++ VQ T    +      PE   ST    T   T  +  
Sbjct: 403 TISTTPRPEWARPPSTPSADGSKPVQTTPKPGQWV----PEKSTSTTQRTTTVSTTEAPP 458

Query: 187 SPSIADPEEEI 197
           +P++++P+ E+
Sbjct: 459 APAVSNPQNEV 469



 Score = 23.8 bits (49), Expect = 4.1
 Identities = 10/41 (24%), Positives = 19/41 (46%)

Query: 76  SSESPSTVDPEEELSTAWTETVQYADASSESPSTANPEEEI 116
           ++  P    PE+  ST    T      +  +P+ +NP+ E+
Sbjct: 429 TTPKPGQWVPEKSTSTTQRTTTVSTTEAPPAPAVSNPQNEV 469



 Score = 22.6 bits (46), Expect = 9.5
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 73  TDTSSESPSTVDPEEELSTAWTETVQYADASSESPSTANPEEEIFTAWTETLPYTDTSSE 132
           T +++  P    P    S   ++ VQ    ++  P    PE+   T    T   T  +  
Sbjct: 403 TISTTPRPEWARPPSTPSADGSKPVQ----TTPKPGQWVPEKSTSTTQRTTTVSTTEAPP 458

Query: 133 SPSIADPEEEI 143
           +P++++P+ E+
Sbjct: 459 APAVSNPQNEV 469


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 14/69 (20%), Positives = 25/69 (36%)

Query: 403  SPSTADLEEDISTAWAETVHYTDTSSQSPSKTDPEEEISTAWTETVQYTDTSSESPSTAD 462
            +P+   +   + T  + T H     +  PS        S  WT T     T++   +T+ 
Sbjct: 1011 TPAPPQVTTGVDTGASSTEHMHPDWTTKPSTWWSSTTTSPWWTTTTTRRTTTTRPTTTST 1070

Query: 463  LEEDISTAW 471
                 +T W
Sbjct: 1071 TTRPTTTNW 1079


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 154 TDNSSESASTADPEDEISTAWTETVPYTDTSSE 186
           +  S   AS+ADP+DE+ +  +    Y   SSE
Sbjct: 132 SSESDSGASSADPDDELRS--SSAFSYIKPSSE 162


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 10/42 (23%), Positives = 20/42 (47%)

Query: 83  VDPEEELSTAWTETVQYADASSESPSTANPEEEIFTAWTETL 124
           ++P ++   AW   + ++D  S    T   ++  F  W +TL
Sbjct: 619 INPHQQHLDAWYWVMDWSDMLSVGNMTLILDKFFFPRWRQTL 660


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 426 TSSQSPSKTDPEEEISTAWTETVQYTD--TSSESPST 460
           + S+   KT+ +  +  AW    +Y+D  +S  SP T
Sbjct: 175 SKSEPEKKTESQPMLWPAWVYCTRYSDRPSSGRSPRT 211


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 11/43 (25%), Positives = 22/43 (51%)

Query: 609 VLYTDTSSESPSRADQEEEISTARTETVPYTATSSESPLTAAP 651
           V + +  ++   +  Q++  S +RT T P    +S++   AAP
Sbjct: 173 VWFKNRRAKCRQQLQQQQNKSASRTTTSPTKVKASKASPAAAP 215


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.298    0.113    0.314 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,365
Number of Sequences: 317
Number of extensions: 7028
Number of successful extensions: 46
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 36
length of query: 711
length of database: 114,650
effective HSP length: 62
effective length of query: 649
effective length of database: 94,996
effective search space: 61652404
effective search space used: 61652404
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.6 bits)
S2: 46 (22.6 bits)