GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000205-TA|BGIBMGA000205-PA|undefined
         (711 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        35   0.003
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    30   0.057
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   1.6  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 34.7 bits (76), Expect = 0.003
 Identities = 51/187 (27%), Positives = 86/187 (45%), Gaps = 22/187 (11%)

Query: 437 EEEISTAWTETVQYTDTSSESPSTADLEEDISTAW--AETVHYTDT-SSQSPSKTDPEEE 493
           ++  S+A   T+Q   TS   P+TA LE  +S A   A  V+Y    +S SP+ + P+  
Sbjct: 16  QQLFSSANPGTIQACTTS---PATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHS 72

Query: 494 ISTAWTETVQYTDASS---ESASIA----DPEDEIST----AWTETVP-YTDTSSESPS- 540
            S+A T     T +S     SA+ A      +  ++     A +  VP +  T++ S + 
Sbjct: 73  GSSASTSPAARTTSSMYPYVSAAAAHHHHQQQQAVAAAAFGATSSMVPGFGSTAASSAAL 132

Query: 541 TADLEDEISTAWTEKVTYTASLE---SPSTADPEEKLSTAWTERVPYTDTSSESPSTADS 597
            A    + +TA  +   YTASL    +P++ADP    +     +   T +S  S ++A S
Sbjct: 133 AAAAAVDAATAGDKSCRYTASLAGNVAPASADPMVNYTLGHHHQNGATPSSLVSSASASS 192

Query: 598 EEEISTA 604
               ++A
Sbjct: 193 AVSAASA 199


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 30.3 bits (65), Expect = 0.057
 Identities = 19/58 (32%), Positives = 29/58 (50%)

Query: 575 STAWTERVPYTDTSSESPSTADSEEEISTAWTKTVLYTDTSSESPSRADQEEEISTAR 632
           ST+ T     +D S+ SPS ++S+E     +T     TD  S   S +D    +ST+R
Sbjct: 183 STSSTASSRNSDRSAGSPSVSESDEVDVIGYTSNQSDTDDHSSVQSSSDSGVTMSTSR 240



 Score = 28.3 bits (60), Expect = 0.23
 Identities = 16/56 (28%), Positives = 30/56 (53%)

Query: 118 TAWTETLPYTDTSSESPSIADPEEEISTAWTETVQYTDNSSESASTADPEDEISTA 173
           T+ T +   +D S+ SPS+++ +E     +T     TD+ S   S++D    +ST+
Sbjct: 184 TSSTASSRNSDRSAGSPSVSESDEVDVIGYTSNQSDTDDHSSVQSSSDSGVTMSTS 239



 Score = 23.8 bits (49), Expect = 4.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 561 SLESPSTADPEEKLSTAWTERVPYTDTSSESPSTADSEEEISTA 604
           S  SPS ++ +E     +T     TD  S   S++DS   +ST+
Sbjct: 196 SAGSPSVSESDEVDVIGYTSNQSDTDDHSSVQSSSDSGVTMSTS 239


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 48  ASAEPRVLQELLKTHSTAWTETVPYTDTSSESPSTVDPEEELSTAWTETVQYADASSE 105
           A+A P + ++L    S A   ++PY   +     ++ P  E +   T  VQ  DAS +
Sbjct: 109 AAANPLLAEKLAAPSSQASPTSIPYATRAEIKTESIQP--ETTKVDTREVQPHDASEK 164


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.298    0.113    0.314 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,669
Number of Sequences: 429
Number of extensions: 6631
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 5
length of query: 711
length of database: 140,377
effective HSP length: 63
effective length of query: 648
effective length of database: 113,350
effective search space: 73450800
effective search space used: 73450800
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.6 bits)
S2: 47 (23.0 bits)