Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000204-TA|BGIBMGA000204-PA|IPR003822|Paired amphipathic
helix, IPR013194|Histone deacetylase interacting
(1039 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 169 2e-42
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 150 1e-36
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 129 2e-30
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 29 2.5
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 29 4.4
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 28 7.7
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 169 bits (410), Expect = 2e-42
Identities = 106/325 (32%), Positives = 157/325 (48%), Gaps = 40/325 (12%)
Query: 339 DYSFFERARKALRSQQVYDNFLRCLLLFTNEIISSSELLSVTSPFLCRHPELQRWLHDFV 398
+ F E AR+ L ++ Y+ F++ L L++ E+ + L+ F + L WL D V
Sbjct: 514 ELEFLEHARQYLANESKYNEFIKLLELYSQEVFDKNALVERCYVFFGSNEHLMNWLKDLV 573
Query: 399 GXXXXXXXXXXXXXXGYPWTNPIPVEPRPRYESVGALGAQMRNDRPQGDMAMDIDLSTCK 458
Y NPIPV PRPR +DL+ CK
Sbjct: 574 K---------------YNPANPIPV-PRPR-----------------------VDLTQCK 594
Query: 459 RLGTSYCALPREAAARKCSGRTPLCKEVLNDTWVSFPTW-SEDSTFVTSRKTQYEEYIYR 517
G SY LP+ CSGR LC +LND WVSFPT SEDS F+ RK Q+EE +++
Sbjct: 595 SCGPSYRLLPKIELLLPCSGRDDLCWTILNDAWVSFPTLASEDSGFIAHRKNQFEENLHK 654
Query: 518 CEDERFELDVVIETNAATIRVLEGVQKKLSRMSGEDAARYRLDDCLGGHSPTVHQRALRR 577
E+ER+E D I N I +L+ K+ +MS + A + L LGG S +++ + +++
Sbjct: 655 LEEERYEYDRHIGANMRFIELLQIHADKMLKMSEVEKANWTLPSNLGGKSVSIYHKVIKK 714
Query: 578 IYGDKVAVDIIAGXXXXXXXXXXXXXXXXXXKEEEWREAQKGFNKQWREQNEKYYLKSLD 637
+YG + A II K+ EWR Q +N+ W + EK + +SLD
Sbjct: 715 VYGKEHAQQIIENLQKNPSVTIPIVLERLKKKDREWRSLQNHWNELWHDIEEKNFYRSLD 774
Query: 638 HQGINFKQNDLKAMRSKTLFNEVES 662
HQG++FK D K+ K L +E+ +
Sbjct: 775 HQGVSFKSVDKKSTTPKFLISELRN 799
Score = 164 bits (399), Expect = 5e-41
Identities = 100/249 (40%), Positives = 135/249 (54%), Gaps = 21/249 (8%)
Query: 45 QFQRLKVEDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHP 104
++++L V DALSYLD VK +F+ +P++YN+FLDIMKEFKSQ I+TP VITRVS LF G+P
Sbjct: 176 EYRQLNVTDALSYLDLVKLQFHQEPEIYNEFLDIMKEFKSQAIETPEVITRVSKLFAGYP 235
Query: 105 ELIVGFNTFLPPGYKIEVQSNGQVSVS-MPSPTAIGSGVLLGVHHTQQPQLVH--LLPVP 161
LI GFNTFLPPGY IE+ S S++ + T G ++ + T P H P+P
Sbjct: 236 NLIQGFNTFLPPGYSIEISSADPGSLAGIHITTPQGPLMINDLGKTTAPPPPHGSTTPLP 295
Query: 162 HAEECRPVGPALQHLSHAA---PDPALHHXXXXXXXXX-----XXXXXXXXXEFNHAIEY 213
A + SH P P+ + + AI +
Sbjct: 296 AAASYTSMNMKQSSASHPVLQPPAPSTLQFNPSPSPAAPSYPPVDASVKQAADLDQAINF 355
Query: 214 VNKIKSRFSRQPDKYKRFLEILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKLFEHQEDLL 273
VN +K+RFS +P+ Y FL+IL +YQ R + Q VY QV++LF DLL
Sbjct: 356 VNNVKNRFSHKPEAYNSFLDILKSYQHDQRPI----------QLVYFQVSQLFAEAPDLL 405
Query: 274 AEFGQFLPD 282
EF +FLPD
Sbjct: 406 EEFKRFLPD 414
Score = 53.2 bits (122), Expect = 2e-07
Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 13/143 (9%)
Query: 47 QRLKVEDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPEL 106
Q ++ A+++++ VK +F+ +P+ YN FLDI+K ++ V +VS LF P+L
Sbjct: 345 QAADLDQAINFVNNVKNRFSHKPEAYNSFLDILKSYQHDQRPIQLVYFQVSQLFAEAPDL 404
Query: 107 IVGFNTFLPP---GYKIEVQSNGQV-----SVSMP--SPTAIGSGVLLGVHHTQQPQLVH 156
+ F FLP E Q V + + P SP+A + L + P
Sbjct: 405 LEEFKRFLPDVSVNAPAETQDKSTVVPQESATATPKRSPSATPTSALPPIGKFAPPTTAK 464
Query: 157 LLPVPHAEECRPVGPALQHLSHA 179
P P E R PA+Q +H+
Sbjct: 465 AQPAP---EKRRGEPAVQTRNHS 484
Score = 37.9 bits (84), Expect = 0.007
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 10/77 (12%)
Query: 210 AIEYVNKIKSRFSRQPDKYKRFLEILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKLFEHQ 269
A+ Y++ +K +F ++P+ Y FL+I +KE +++ EV ++V+KLF
Sbjct: 185 ALSYLDLVKLQFHQEPEIYNEFLDI----------MKEFKSQAIETPEVITRVSKLFAGY 234
Query: 270 EDLLAEFGQFLPDAKAV 286
+L+ F FLP ++
Sbjct: 235 PNLIQGFNTFLPPGYSI 251
Score = 31.5 bits (68), Expect = 0.63
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 929 MESSAFEDAAREMLGIKAYPAYTLDKLVS 957
++ + FEDA R + GI A+ YT++KLV+
Sbjct: 1086 IDQNGFEDALRCLYGIHAFRLYTVEKLVT 1114
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 150 bits (363), Expect = 1e-36
Identities = 98/255 (38%), Positives = 137/255 (53%), Gaps = 28/255 (10%)
Query: 49 LKVEDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIV 108
L V DALSYL+ VKY F+ + ++YN FL+IM++FKSQ +DT GVI RVS LF G+P+LI
Sbjct: 113 LDVNDALSYLELVKYYFSERREIYNRFLEIMRDFKSQALDTLGVINRVSELFNGYPQLIE 172
Query: 109 GFNTFLPPGYKIEVQSNGQVSVSMPSPTAIGSGVLLGVHHTQQPQLVHLLPV-PHAEECR 167
GFNTFLP GYKIEVQ + S S +G+ + H Q + LPV P E+ R
Sbjct: 173 GFNTFLPSGYKIEVQLDS----SNTSVVRVGTPM----HPLPQQGVQSTLPVAPSNEDQR 224
Query: 168 PVGPALQHLSHAAPDPALHHXXXXXXXXXXXXXXXXXXEFNHAIEYVNKIKSRFSRQPDK 227
+ + + P P+ + +FN+AI Y+NK+K+R+ D
Sbjct: 225 TMESTSP--TDSQPQPSAPNLVSSTENEKPRV------DFNYAIAYMNKVKARYPPNSDT 276
Query: 228 YKRFLEILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKLFEHQEDLLAEFGQFLPDAKAVT 287
Y FL +L YQ+ + + E +A+ VA++F+ DLL EF FLPD T
Sbjct: 277 YMEFLGVLRTYQKAQKSIFEVRAR----------VAEIFKDSPDLLEEFKLFLPDNVDST 326
Query: 288 KPE-PAHEHHPMTFP 301
+P P + P P
Sbjct: 327 EPSTPNVQKSPNRLP 341
Score = 63.7 bits (148), Expect = 1e-10
Identities = 46/213 (21%), Positives = 89/213 (41%), Gaps = 6/213 (2%)
Query: 456 TCKRLGTSYCALPREAAARKCSGRTPLCKEVLNDTWVSFPTWSEDSTFVTSRKTQYEEYI 515
T + + +Y LP KCSGR L VLND ++S + + QY + +
Sbjct: 492 TFECISLTYRKLPDSWKQDKCSGRDDLDNSVLNDDYISVAPKPSHVKNIMHHENQYLQAL 551
Query: 516 YRCEDERFELDVVIETNAATIRVLEGVQKKLSRMSGEDAARYRLDDCLGGHSPTVHQRAL 575
EDER++ D V+ T + I++L + E A + L+ S + + AL
Sbjct: 552 QLVEDERYDYDRVLNTTESAIKILANFCEPTIHEHLETALQ-ELE-----RSKRIIKNAL 605
Query: 576 RRIYGDKVAVDIIAGXXXXXXXXXXXXXXXXXXKEEEWREAQKGFNKQWREQNEKYYLKS 635
+YG + A + K++EWR +++ ++K WR+ +K +
Sbjct: 606 IIVYGKEHANLALDTLFKKLPTAAPVLLKRIKTKDQEWRRSKREWSKIWRQIEKKNAQAA 665
Query: 636 LDHQGINFKQNDLKAMRSKTLFNEVESAYAARR 668
D + + D + + + +++ Y ++
Sbjct: 666 FDDRYCRIEGRDRRGLSYSRILRDIDDIYQRQK 698
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/68 (27%), Positives = 37/68 (54%)
Query: 48 RLKVEDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELI 107
R+ A++Y+++VK ++ Y +FL +++ ++ V RV+ +FK P+L+
Sbjct: 253 RVDFNYAIAYMNKVKARYPPNSDTYMEFLGVLRTYQKAQKSIFEVRARVAEIFKDSPDLL 312
Query: 108 VGFNTFLP 115
F FLP
Sbjct: 313 EEFKLFLP 320
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 129 bits (312), Expect = 2e-30
Identities = 69/202 (34%), Positives = 104/202 (51%), Gaps = 1/202 (0%)
Query: 461 GTSYCALPREAAARKCSGRTPLCKEVLNDTWVSFPTW-SEDSTFVTSRKTQYEEYIYRCE 519
G SY LP E CSGR +LND WVS PTW SE+S F+ RKT YEE + + E
Sbjct: 338 GPSYRLLPVEERNISCSGRDDFAWGILNDDWVSHPTWASEESGFIVQRKTPYEEAMTKLE 397
Query: 520 DERFELDVVIETNAATIRVLEGVQKKLSRMSGEDAARYRLDDCLGGHSPTVHQRALRRIY 579
+ER+E D IE + TI+ L+ +Q +++ + E+ Y L++ LG S +++++ ++ +Y
Sbjct: 398 EERYEFDRHIEATSWTIKSLKKIQNRINELPEEERETYTLEEGLGLPSKSIYKKTIKLVY 457
Query: 580 GDKVAVDIIAGXXXXXXXXXXXXXXXXXXKEEEWREAQKGFNKQWREQNEKYYLKSLDHQ 639
+ A ++ K EEW+ ++ WR K Y KSLD Q
Sbjct: 458 TSEHAEEMFKALERMPCLTLPLVISRLEEKNEEWKSVKRSLQPGWRSIEFKNYDKSLDSQ 517
Query: 640 GINFKQNDLKAMRSKTLFNEVE 661
+ FK D K + SK L E +
Sbjct: 518 CVYFKARDKKNVSSKFLLAEAD 539
Score = 55.6 bits (128), Expect = 3e-08
Identities = 22/74 (29%), Positives = 45/74 (60%)
Query: 53 DALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIVGFNT 112
D +++ ++ + +P VY+ F+D++K ++ +D PG I R+S + + +P+L+ N
Sbjct: 38 DIKAFVQKLGQRLCHRPYVYSAFMDVVKALHNEIVDFPGFIERISVILRDYPDLLEYLNI 97
Query: 113 FLPPGYKIEVQSNG 126
FLP YK + ++G
Sbjct: 98 FLPSSYKYLLSNSG 111
Score = 34.3 bits (75), Expect = 0.089
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 54 ALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIVGFNTF 113
A+ ++ +V+ + P+ + D +++FK+ + T V++L HP L F+ F
Sbjct: 145 AIGFVSRVRRALLSNPEQFFKLQDSLRKFKNSECSLSELQTIVTSLLAEHPSLAHEFHNF 204
Query: 114 LP 115
LP
Sbjct: 205 LP 206
Score = 34.3 bits (75), Expect = 0.089
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 929 MESSAFEDAAREMLGIKAYPAYTLDKLV 956
++ SAFED R G KAY YT+DKLV
Sbjct: 824 VDQSAFEDYLRFYYGNKAYKIYTIDKLV 851
Score = 32.3 bits (70), Expect = 0.36
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 342 FFERARKALRSQ-QVYDNFLRCLLLFTNEIISSSELLSVTSPFLCRHPELQRWLHDFV 398
F R R+AL S + + L F N S SEL ++ + L HP L H+F+
Sbjct: 148 FVSRVRRALLSNPEQFFKLQDSLRKFKNSECSLSELQTIVTSLLAEHPSLAHEFHNFL 205
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 504 VTSRKTQY-EEYIYRCEDE----RFELDVVIETNAATIRVLEGVQKKLSRMSGED 553
+T+RKT + + +I R +DE R ELD+V + N + L+G ++K+ + E+
Sbjct: 542 LTNRKTSFTDSHILRLQDEVNQLRNELDLVNKRNEDLLIELQGKEEKIQYLETEN 596
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 207 FNHAIEYVNKIKSRFSRQPDKYKRFLEILHAYQRGHRDLKEPQAK 251
+N+ Y K R P+KY FLE+ Y RG + +P K
Sbjct: 38 YNYECTYGQPFK-RLRHAPEKYIEFLELRLKYLRGLAEESDPNLK 81
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 53 DALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIVGFNT 112
D+LSY+D Y+F++QP +Y + ++M + S + + + R N + +VGF T
Sbjct: 692 DSLSYVD---YRFSSQPTIYETY-ELMND--SASFEDMSLECR-DNCANAFQDNLVGFPT 744
Query: 113 FLPP 116
P
Sbjct: 745 ISNP 748
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,811,435
Number of Sequences: 5004
Number of extensions: 139695
Number of successful extensions: 429
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 396
Number of HSP's gapped (non-prelim): 27
length of query: 1039
length of database: 2,362,478
effective HSP length: 80
effective length of query: 959
effective length of database: 1,962,158
effective search space: 1881709522
effective search space used: 1881709522
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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