Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000204-TA|BGIBMGA000204-PA|IPR003822|Paired amphipathic
helix, IPR013194|Histone deacetylase interacting
         (1039 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               27   0.79 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    27   0.79 

>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 27.1 bits (57), Expect = 0.79
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 358 NFLRCLLLFTNEIISSSELLSVTSPFLCRHPE 389
           + LRC+ LF + I+ +S  ++   P  C+ PE
Sbjct: 3   SMLRCIYLFLSVILITSYFVTPVMPCNCKAPE 34


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 27.1 bits (57), Expect = 0.79
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 547 SRMSGEDAARY-RLDDCLGGHSPTVHQRALRRIYGDKVAVDIIAG 590
           S +S  D+AR+ R+  C G H+ T H R L  I G      +++G
Sbjct: 389 SIVSSPDSARHQRIGGCNGLHTTTAHNRFLGGIGGYNGLPTVMSG 433


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.134    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,721
Number of Sequences: 429
Number of extensions: 9073
Number of successful extensions: 18
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 2
length of query: 1039
length of database: 140,377
effective HSP length: 65
effective length of query: 974
effective length of database: 112,492
effective search space: 109567208
effective search space used: 109567208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)