Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000204-TA|BGIBMGA000204-PA|IPR003822|Paired amphipathic
helix, IPR013194|Histone deacetylase interacting
(1039 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g01320.1 68416.m00045 paired amphipathic helix repeat-contain... 146 5e-35
At1g24190.1 68414.m03051 paired amphipathic helix repeat-contain... 134 2e-31
At5g15020.1 68418.m01761 paired amphipathic helix repeat-contain... 127 4e-29
At1g70060.1 68414.m08061 paired amphipathic helix repeat-contain... 126 6e-29
At1g59890.1 68414.m06747 paired amphipathic helix repeat-contain... 122 9e-28
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain... 121 2e-27
At1g70030.1 68414.m08059 paired amphipathic helix repeat-contain... 82 2e-15
At5g15030.1 68418.m01762 paired amphipathic helix repeat-contain... 75 2e-13
At4g12020.1 68417.m01912 protein kinase family protein similar t... 73 1e-12
At1g24200.1 68414.m03052 paired amphipathic helix repeat-contain... 72 2e-12
At1g27220.1 68414.m03315 paired amphipathic helix repeat-contain... 69 2e-11
At1g27250.1 68414.m03319 paired amphipathic helix repeat-contain... 68 4e-11
At1g27280.1 68414.m03323 paired amphipathic helix repeat-contain... 63 1e-09
At5g15040.1 68418.m01763 paired amphipathic helix repeat-contain... 61 3e-09
At1g24220.1 68414.m03054 paired amphipathic helix repeat-contain... 60 8e-09
At5g35610.1 68418.m04249 paired amphipathic helix repeat-contain... 59 1e-08
At1g24250.1 68414.m03057 paired amphipathic helix repeat-contain... 59 1e-08
At1g24230.1 68414.m03055 paired amphipathic helix repeat-contain... 58 4e-08
At1g24210.1 68414.m03053 paired amphipathic helix repeat-contain... 58 4e-08
At1g23810.1 68414.m03003 paired amphipathic helix repeat-contain... 57 5e-08
At1g27260.1 68414.m03321 paired amphipathic helix repeat-contain... 54 4e-07
At1g27240.1 68414.m03317 paired amphipathic helix repeat-contain... 54 4e-07
At1g27270.1 68414.m03322 paired amphipathic helix repeat-contain... 54 5e-07
At1g79950.1 68414.m09344 helicase-related similar to BRCA1-bindi... 41 0.005
At3g28870.1 68416.m03604 hypothetical protein 34 0.57
At3g24260.1 68416.m03047 hypothetical protein 33 1.3
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 31 5.3
At1g10250.1 68414.m01155 expressed protein weak similarity to tr... 31 5.3
At5g09910.1 68418.m01146 GTP-binding protein-related contains we... 30 7.0
At2g33735.1 68415.m04135 DNAJ heat shock N-terminal domain-conta... 30 7.0
>At3g01320.1 68416.m00045 paired amphipathic helix repeat-containing
protein low similarity to transcription co-repressor
Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 1378
Score = 146 bits (355), Expect = 5e-35
Identities = 98/336 (29%), Positives = 158/336 (47%), Gaps = 21/336 (6%)
Query: 340 YSFFERARKALRSQQVYDNFLRCLLLFTNEIISSSELLSVTSPFLCRHPELQRWLHDFVG 399
+ F E+ + L SQ Y FL+CL +F+N II +L ++ S L + P+L + F
Sbjct: 345 FVFCEKVKDRLCSQDDYQTFLKCLNIFSNGIIQRKDLQNLVSDLLGKFPDLMDEFNQFFE 404
Query: 400 XXXXXXX---------XXXXXXXGYPWTNPIPVEPR-----PRYESVGALGAQMRNDRPQ 445
+ P+ VE + P E+V Q + +
Sbjct: 405 RCESITDGFQRLAGVMSKKLFSSEEQLSRPMKVEEKESEHKPELEAVKET-EQCKKEY-M 462
Query: 446 GDMAMDIDLSTCKRLGTSYCALPREAAARKCSGRTPLCKEVLNDTWVSFPTWSEDSTFVT 505
G ++DLS C+ SY LP + S R+ L EVLND WVS + SED +F
Sbjct: 463 GKSIQELDLSDCECCTPSYRLLPADYPIPIASQRSELGAEVLNDHWVSVTSGSEDYSFKH 522
Query: 506 SRKTQYEEYIYRCEDERFELDVVIETNAATIRVLEGVQKKLSRMSGEDAARYRLDDCLGG 565
R+ QYEE ++RCED+RFELD+++E+ ++ R E + ++ + +R++D
Sbjct: 523 MRRNQYEESLFRCEDDRFELDMLLESVSSAARSAESLLNIITEKKISFSGSFRIED---- 578
Query: 566 HSPTVHQRALRRIYGDKVAVDIIAGXXXXXXXXXXXXXXXXXXKEEEWREAQKGFNKQWR 625
H ++ R + R+YGD +D+I K+ EW++ + F+K W
Sbjct: 579 HFTALNLRCIERLYGDH-GLDVIDILNKNPATALPVILTRLKQKQGEWKKCRDDFDKVWA 637
Query: 626 EQNEKYYLKSLDHQGINFKQNDLKAMRSKTLFNEVE 661
K + KSLDH+ FKQ D K + +K+L E++
Sbjct: 638 NVYAKNHYKSLDHRSFYFKQQDSKNLSAKSLLAEIK 673
Score = 94.3 bits (224), Expect = 4e-19
Identities = 44/74 (59%), Positives = 53/74 (71%)
Query: 47 QRLKVEDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPEL 106
Q+L DALSYL +VK F Q + Y+ FL++MK+FK+Q DT GVI RV LFKGH L
Sbjct: 51 QKLTTNDALSYLREVKEMFQDQREKYDRFLEVMKDFKAQRTDTGGVIARVKELFKGHNNL 110
Query: 107 IVGFNTFLPPGYKI 120
I GFNTFLP GY+I
Sbjct: 111 IYGFNTFLPKGYEI 124
Score = 61.3 bits (142), Expect = 3e-09
Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 10/76 (13%)
Query: 206 EFNHAIEYVNKIKSRFSRQPDKYKRFLEILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKL 265
EF AI +VNKIK RF YK FLEIL+ Y++ ++++K EVY++V+ L
Sbjct: 139 EFEQAINFVNKIKMRFKHDEHVYKSFLEILNMYRKENKEIK----------EVYNEVSIL 188
Query: 266 FEHQEDLLAEFGQFLP 281
F+ DLL +F +FLP
Sbjct: 189 FQGHLDLLEQFTRFLP 204
Score = 50.8 bits (116), Expect = 5e-06
Identities = 21/67 (31%), Positives = 40/67 (59%)
Query: 49 LKVEDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIV 108
++ E A+++++++K +F VY FL+I+ ++ + + V VS LF+GH +L+
Sbjct: 138 VEFEQAINFVNKIKMRFKHDEHVYKSFLEILNMYRKENKEIKEVYNEVSILFQGHLDLLE 197
Query: 109 GFNTFLP 115
F FLP
Sbjct: 198 QFTRFLP 204
Score = 41.5 bits (93), Expect = 0.003
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 208 NHAIEYVNKIKSRFSRQPDKYKRFLEILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKLFE 267
N A+ Y+ ++K F Q +KY RFLE+ +K+ +A++ V ++V +LF+
Sbjct: 56 NDALSYLREVKEMFQDQREKYDRFLEV----------MKDFKAQRTDTGGVIARVKELFK 105
Query: 268 HQEDLLAEFGQFLPDAKAVT 287
+L+ F FLP +T
Sbjct: 106 GHNNLIYGFNTFLPKGYEIT 125
Score = 31.5 bits (68), Expect = 3.0
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 930 ESSAFEDAAREMLGIKAYPAYTLDKLV 956
E++ FED R ++G ++Y +TLDKL+
Sbjct: 1168 ENTKFEDECRAIIGNQSYVLFTLDKLI 1194
>At1g24190.1 68414.m03051 paired amphipathic helix repeat-containing
protein similar to transcription co-repressor Sin3
[Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 1353
Score = 134 bits (325), Expect = 2e-31
Identities = 74/224 (33%), Positives = 117/224 (52%), Gaps = 5/224 (2%)
Query: 451 DIDLSTCKRLGTSYCALPREAAARKCSGRTPLCKEVLNDTWVSFPTWSEDSTFVTSRKTQ 510
++DLS C++ SY LP+ S +T + K VLND WVS + SED +F RK Q
Sbjct: 444 ELDLSNCEQCTPSYRLLPKNYPISIASQKTEIGKLVLNDHWVSVTSGSEDYSFSHMRKNQ 503
Query: 511 YEEYIYRCEDERFELDVVIETNAATIRVLEGVQKKLSRMSGEDAARYRLDDCLGGHSPTV 570
YEE +++CED+RFELD+++E+ +T + +E + K++ + + R++D H +
Sbjct: 504 YEESLFKCEDDRFELDMLLESVNSTTKHVEELLTKINSNELKTNSPIRVED----HLTAL 559
Query: 571 HQRALRRIYGDKVAVDIIAGXXXXXXXXXXXXXXXXXXKEEEWREAQKGFNKQWREQNEK 630
+ R + R+YGD +D++ K+EEW + F+K W E K
Sbjct: 560 NLRCIERLYGDH-GLDVMDVLKKNVSLALPVILTRLKQKQEEWARCRSDFDKVWAEIYAK 618
Query: 631 YYLKSLDHQGINFKQNDLKAMRSKTLFNEVESAYAARRPGPHLV 674
Y KSLDH+ FKQ D K + K L E++ +R L+
Sbjct: 619 NYYKSLDHRSFYFKQQDSKKLSMKALLAEIKEITEKKREDDSLL 662
Score = 102 bits (245), Expect = 1e-21
Identities = 49/82 (59%), Positives = 61/82 (74%), Gaps = 1/82 (1%)
Query: 47 QRLKVEDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPEL 106
Q+L DAL+YL VK KF Q Y++FL++MK FKSQ +DT GVITRV LFKGH EL
Sbjct: 31 QKLTTNDALAYLKAVKDKFQDQRGKYDEFLEVMKNFKSQRVDTAGVITRVKELFKGHQEL 90
Query: 107 IVGFNTFLPPGYKIEVQ-SNGQ 127
I+GFNTFLP G++I +Q +GQ
Sbjct: 91 ILGFNTFLPKGFEITLQPEDGQ 112
Score = 64.1 bits (149), Expect = 5e-10
Identities = 36/80 (45%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 206 EFNHAIEYVNKIKSRFSRQPDKYKRFLEILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKL 265
EF AI +VNKIK+RF YK FL+IL+ Y+R + + EVY +VA L
Sbjct: 120 EFEEAISFVNKIKTRFQGDDRVYKSFLDILNMYRRDSKSI----------TEVYQEVAIL 169
Query: 266 FEHQEDLLAEFGQFLPDAKA 285
F DLL EF FLPD A
Sbjct: 170 FRDHSDLLVEFTHFLPDTSA 189
Score = 54.0 bits (124), Expect = 5e-07
Identities = 23/69 (33%), Positives = 43/69 (62%)
Query: 47 QRLKVEDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPEL 106
+R++ E+A+S+++++K +F +VY FLDI+ ++ + V V+ LF+ H +L
Sbjct: 117 KRVEFEEAISFVNKIKTRFQGDDRVYKSFLDILNMYRRDSKSITEVYQEVAILFRDHSDL 176
Query: 107 IVGFNTFLP 115
+V F FLP
Sbjct: 177 LVEFTHFLP 185
Score = 46.0 bits (104), Expect = 1e-04
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 318 LSGATVRDVSYSEAAKLATI-HDYSFFERARKALRSQQVYDNFLRCLLLFTNEIISSSEL 376
LSGA +Y E + + D + +R ++ L + + Y FLRCL LF+ EIIS EL
Sbjct: 291 LSGAVPSSSTYDEKGAMKSYSQDLAIVDRVKEKLNASE-YQEFLRCLNLFSKEIISRPEL 349
Query: 377 LSVTSPFLCRHPELQRWLHDFV 398
S+ + +P+L +F+
Sbjct: 350 QSLVGNLIGVYPDLMDSFIEFL 371
Score = 38.3 bits (85), Expect = 0.026
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 11/84 (13%)
Query: 208 NHAIEYVNKIKSRFSRQPDKYKRFLEILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKLFE 267
N A+ Y+ +K +F Q KY FLE+ +K ++++ V ++V +LF+
Sbjct: 36 NDALAYLKAVKDKFQDQRGKYDEFLEV----------MKNFKSQRVDTAGVITRVKELFK 85
Query: 268 HQEDLLAEFGQFLPDAKAVT-KPE 290
++L+ F FLP +T +PE
Sbjct: 86 GHQELILGFNTFLPKGFEITLQPE 109
Score = 36.3 bits (80), Expect = 0.11
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 55 LSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIVGFNTFL 114
L+ +D+VK K N Y +FL + F + I P + + V NL +P+L+ F FL
Sbjct: 314 LAIVDRVKEKLNASE--YQEFLRCLNLFSKEIISRPELQSLVGNLIGVYPDLMDSFIEFL 371
Query: 115 PPGYKIEVQSNGQVSVSMPSPTAIGSG 141
K E +G ++ S + G G
Sbjct: 372 VQCEKNEGLLSGILTKSKSTYLLQGEG 398
Score = 33.9 bits (74), Expect = 0.57
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 909 SPTEYYXXXXXXXXXXXXXXMESSAFEDAAREMLGIKAYPAYTLDKLV 956
+PT+ Y +++ FED R ++G ++Y +TLDKL+
Sbjct: 1117 NPTDSYARFMTALYNLLDGTSDNAKFEDDCRAIIGTQSYILFTLDKLI 1164
>At5g15020.1 68418.m01761 paired amphipathic helix repeat-containing
protein similar to transcription co-repressor Sin3
[Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 1377
Score = 127 bits (306), Expect = 4e-29
Identities = 74/245 (30%), Positives = 118/245 (48%), Gaps = 5/245 (2%)
Query: 442 DRPQGDMAMDIDLSTCKRLGTSYCALPREAAARKCSGRTPLCKEVLNDTWVSFPTWSEDS 501
D+ G ++DLS C+R SY LP + R VLND WVS + SED
Sbjct: 482 DKYMGKSIQELDLSDCERCTPSYRLLPPDYPIPSVRHRQKSGAAVLNDHWVSVTSGSEDY 541
Query: 502 TFVTSRKTQYEEYIYRCEDERFELDVVIETNAATIRVLEGVQKKLSRMSGEDAARYRLDD 561
+F R+ QYEE ++RCED+RFELD+++E+ + + E + + +R++D
Sbjct: 542 SFKHMRRNQYEESLFRCEDDRFELDMLLESVGSAAKSAEELLNIIIDKKISFEGSFRIED 601
Query: 562 CLGGHSPTVHQRALRRIYGDKVAVDIIAGXXXXXXXXXXXXXXXXXXKEEEWREAQKGFN 621
H ++ R + R+YGD +D+ K++EW + ++GFN
Sbjct: 602 ----HFTALNLRCIERLYGDH-GLDVTDLIRKNPAAALPVILTRLKQKQDEWTKCREGFN 656
Query: 622 KQWREQNEKYYLKSLDHQGINFKQNDLKAMRSKTLFNEVESAYAARRPGPHLVVDYNMQS 681
W + K + KSLDH+ FKQ D K + +K L +EV+ + +V+ +
Sbjct: 657 VVWADVYAKNHYKSLDHRSFYFKQQDSKNLSAKALVSEVKDLKEKSQKEDDVVLSISAGY 716
Query: 682 RQEAI 686
RQ I
Sbjct: 717 RQPII 721
Score = 92.3 bits (219), Expect = 2e-18
Identities = 42/74 (56%), Positives = 54/74 (72%)
Query: 47 QRLKVEDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPEL 106
Q+L +DAL+YL +VK F Q Y+ FL++MK+FK+Q DT GVI+RV LFKGH L
Sbjct: 46 QKLTTDDALTYLKEVKEMFQDQRDKYDMFLEVMKDFKAQKTDTSGVISRVKELFKGHNNL 105
Query: 107 IVGFNTFLPPGYKI 120
I GFNTFLP G++I
Sbjct: 106 IFGFNTFLPKGFEI 119
Score = 68.9 bits (161), Expect = 2e-11
Identities = 37/80 (46%), Positives = 50/80 (62%), Gaps = 10/80 (12%)
Query: 206 EFNHAIEYVNKIKSRFSRQPDKYKRFLEILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKL 265
EF AI +VNKIK+RF YK FLEIL+ Y++ ++D+ EVY++V+ L
Sbjct: 133 EFEEAISFVNKIKTRFQHNELVYKSFLEILNMYRKDNKDI----------TEVYNEVSTL 182
Query: 266 FEHQEDLLAEFGQFLPDAKA 285
FE DLL EF +FLPD+ A
Sbjct: 183 FEDHSDLLEEFTRFLPDSLA 202
Score = 51.6 bits (118), Expect = 3e-06
Identities = 22/67 (32%), Positives = 39/67 (58%)
Query: 49 LKVEDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIV 108
++ E+A+S+++++K +F VY FL+I+ ++ D V VS LF+ H +L+
Sbjct: 132 VEFEEAISFVNKIKTRFQHNELVYKSFLEILNMYRKDNKDITEVYNEVSTLFEDHSDLLE 191
Query: 109 GFNTFLP 115
F FLP
Sbjct: 192 EFTRFLP 198
Score = 44.8 bits (101), Expect = 3e-04
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 327 SYSEAAKLATIHDYSFF--ERARKALRSQQVYDNFLRCLLLFTNEIISSSELLSVTSPFL 384
S+SE L ++++ +F E+ ++ L SQ Y FL+CL +F+N II +L ++ S L
Sbjct: 320 SHSEKNNLKSMYNQAFLFCEKVKERLCSQDDYQAFLKCLNMFSNGIIQRKDLQNLVSDVL 379
Query: 385 CRHPELQRWLHDF 397
+ P+L + F
Sbjct: 380 GKFPDLMDEFNQF 392
Score = 39.9 bits (89), Expect = 0.009
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 10/78 (12%)
Query: 210 AIEYVNKIKSRFSRQPDKYKRFLEILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKLFEHQ 269
A+ Y+ ++K F Q DKY FLE+ +K+ +A++ V S+V +LF+
Sbjct: 53 ALTYLKEVKEMFQDQRDKYDMFLEV----------MKDFKAQKTDTSGVISRVKELFKGH 102
Query: 270 EDLLAEFGQFLPDAKAVT 287
+L+ F FLP +T
Sbjct: 103 NNLIFGFNTFLPKGFEIT 120
Score = 31.1 bits (67), Expect = 4.0
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 930 ESSAFEDAAREMLGIKAYPAYTLDKLV 956
E+S FED R ++G ++Y +TL+KL+
Sbjct: 1182 ENSKFEDECRAIIGNQSYVLFTLEKLI 1208
>At1g70060.1 68414.m08061 paired amphipathic helix repeat-containing
protein similar to transcription co-repressor Sin3
[Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 1362
Score = 126 bits (305), Expect = 6e-29
Identities = 80/292 (27%), Positives = 137/292 (46%), Gaps = 17/292 (5%)
Query: 451 DIDLSTCKRLGTSYCALPREAAARKCSGRTPLCKEVLNDTWVSFPTWSEDSTFVTSRKTQ 510
++DLS C++ SY LP+ S + + +VLND WVS + SED +F RK Q
Sbjct: 459 ELDLSNCEQCTPSYRRLPKNYPIPIASQKMEIGSQVLNDHWVSVTSGSEDYSFKHMRKNQ 518
Query: 511 YEEYIYRCEDERFELDVVIETNAATIRVLEGVQKKLSRMSGEDAARYRLDDCLGGHSPTV 570
YEE +++CED+RFELD+++E + I V++ L++++ + + C+ H +
Sbjct: 519 YEESLFKCEDDRFELDMLLE---SVISATNRVEELLAKINSNE-LKTDTPICIEDHLTAL 574
Query: 571 HQRALRRIYGDKVAVDIIAGXXXXXXXXXXXXXXXXXXKEEEWREAQKGFNKQWREQNEK 630
+ R + R+Y D +D++ K+EEW + FNK W + K
Sbjct: 575 NLRCIERLYSDH-GLDVLDLLKKNAYLALPVILTRLKQKQEEWARCRTEFNKVWADIYTK 633
Query: 631 YYLKSLDHQGINFKQNDLKAMRSKTLFNEV----------ESAYAARRPGPHLVVDYNMQ 680
Y +SLDH+ FKQ D K + +K L E+ + A A G + NM
Sbjct: 634 NYHRSLDHRSFYFKQQDSKNLSTKALLAEIKEISEKKRGEDDALLALAAGNRRTISSNMS 693
Query: 681 SRQEAIKIVRDTAELLIHHARRQTAIQKAEKRRIKQLLRHFLPDLFSHPRQP 732
+ D +L+ + + ++ +K + ++ FL +F P +P
Sbjct: 694 FDYPDPDLHEDLYQLIKYSCGEMCSTEQLDK--VMKVWTEFLEPIFGVPSRP 743
Score = 93.9 bits (223), Expect = 5e-19
Identities = 42/77 (54%), Positives = 58/77 (75%)
Query: 47 QRLKVEDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPEL 106
Q+L DAL+YL VK KF + Y++FL++MK+FK+Q +DT GVI RV LFKG+ EL
Sbjct: 8 QKLTTNDALAYLKAVKDKFQDKRDKYDEFLEVMKDFKAQRVDTTGVILRVKELFKGNREL 67
Query: 107 IVGFNTFLPPGYKIEVQ 123
I+GFNTFLP G++I ++
Sbjct: 68 ILGFNTFLPKGFEITLR 84
Score = 62.9 bits (146), Expect = 1e-09
Identities = 35/80 (43%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 206 EFNHAIEYVNKIKSRFSRQPDKYKRFLEILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKL 265
EF AI +VNKIK+RF YK FL+IL+ Y++ ++ + EVY +VA L
Sbjct: 98 EFEEAISFVNKIKTRFQGDDRVYKSFLDILNMYRKENKSI----------TEVYHEVAIL 147
Query: 266 FEHQEDLLAEFGQFLPDAKA 285
F DLL EF FLPD A
Sbjct: 148 FRDHHDLLGEFTHFLPDTSA 167
Score = 48.8 bits (111), Expect = 2e-05
Identities = 21/67 (31%), Positives = 40/67 (59%)
Query: 49 LKVEDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIV 108
++ E+A+S+++++K +F +VY FLDI+ ++ + V V+ LF+ H +L+
Sbjct: 97 VEFEEAISFVNKIKTRFQGDDRVYKSFLDILNMYRKENKSITEVYHEVAILFRDHHDLLG 156
Query: 109 GFNTFLP 115
F FLP
Sbjct: 157 EFTHFLP 163
Score = 41.5 bits (93), Expect = 0.003
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 14/97 (14%)
Query: 208 NHAIEYVNKIKSRFSRQPDKYKRFLEILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKLFE 267
N A+ Y+ +K +F + DKY FLE+ +K+ +A++ V +V +LF+
Sbjct: 13 NDALAYLKAVKDKFQDKRDKYDEFLEV----------MKDFKAQRVDTTGVILRVKELFK 62
Query: 268 HQEDLLAEFGQFLPDAKAVT-KPE---PAHEHHPMTF 300
+L+ F FLP +T +PE PA P+ F
Sbjct: 63 GNRELILGFNTFLPKGFEITLRPEDDQPAAPKKPVEF 99
Score = 35.5 bits (78), Expect = 0.19
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 339 DYSFFERARKALRSQQVYDNFLRCLLLFTNEIISSSELLSVTSPFLCRHPEL 390
+ +F +R + L + + FLRCL L++ EIIS EL S+ S + +P+L
Sbjct: 314 ELAFVDRVKAKLDTADNQE-FLRCLNLYSKEIISQPELQSLVSDLIGVYPDL 364
Score = 35.5 bits (78), Expect = 0.19
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 55 LSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIVGFNTFL 114
L+++D+VK K +T +FL + + + I P + + VS+L +P+L+ F FL
Sbjct: 315 LAFVDRVKAKLDTADN--QEFLRCLNLYSKEIISQPELQSLVSDLIGVYPDLMDAFKVFL 372
Query: 115 PPGYKIEVQSNGQVSVSMPS 134
K + +G VS S S
Sbjct: 373 AQCDKNDGLLSGIVSKSKSS 392
Score = 33.5 bits (73), Expect = 0.75
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 908 SSPTEYYXXXXXXXXXXXXXXMESSAFEDAAREMLGIKAYPAYTLDKLV 956
++P + Y ++S FED R ++G ++Y +TLDKL+
Sbjct: 1115 TNPADSYARIMDALYNLLDGTSDNSKFEDDCRAIIGTQSYVLFTLDKLI 1163
>At1g59890.1 68414.m06747 paired amphipathic helix repeat-containing
protein similar to transcription co-repressor Sin3
[Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 1159
Score = 122 bits (295), Expect = 9e-28
Identities = 70/211 (33%), Positives = 111/211 (52%), Gaps = 8/211 (3%)
Query: 451 DIDLSTCKRLGTSYCALPREAAARKCSGRTPLCKEVLNDTWVSFPTWSEDSTFVTSRKTQ 510
++DL+ C + SY LP + + S R L ++VLND WVS + SED +F RK Q
Sbjct: 310 ELDLTDCAQCTPSYRRLPDDYPIQIPSYRNSLGEKVLNDHWVSVTSGSEDYSFKHMRKNQ 369
Query: 511 YEEYIYRCEDERFELDVVIETNAATIRVLEGVQKKLSRMSGEDAARYRLDDCLGGHSPTV 570
YEE ++RCED+RFELD+++E+ +A I+ +E + +K++ + C+ H +
Sbjct: 370 YEESLFRCEDDRFELDMLLESVSAAIKRVESLLEKIN----NNTISIETPICIREH---L 422
Query: 571 HQRALRRIYGDKVAVDIIAGXXXXXXXXXXXXXXXXXXKEEEWREAQKGFNKQWREQNEK 630
+ + R+YGD +D++ K+EEW + F K W E K
Sbjct: 423 SGKCIERLYGD-YGLDVMDFLKKNSHIALPVILTRLKQKQEEWARCRADFRKVWAEVYAK 481
Query: 631 YYLKSLDHQGINFKQNDLKAMRSKTLFNEVE 661
+ KSLDH+ FKQ D K + +K L E++
Sbjct: 482 NHHKSLDHRSFYFKQQDSKNLSTKGLVAEIK 512
Score = 89.8 bits (213), Expect = 8e-18
Identities = 41/75 (54%), Positives = 53/75 (70%)
Query: 49 LKVEDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIV 108
L DAL+YL VK F + Y FL +MK+FK+Q +DT GVI RV +LFKG+ +L++
Sbjct: 41 LTTVDALTYLKAVKDMFQDNKEKYETFLGVMKDFKAQRVDTNGVIARVKDLFKGYDDLLL 100
Query: 109 GFNTFLPPGYKIEVQ 123
GFNTFLP GYKI +Q
Sbjct: 101 GFNTFLPKGYKITLQ 115
Score = 62.5 bits (145), Expect = 1e-09
Identities = 35/92 (38%), Positives = 54/92 (58%), Gaps = 11/92 (11%)
Query: 206 EFNHAIEYVNKIKSRFSRQPDKYKRFLEILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKL 265
+F AIE+VN+IK+RF YK+FL+IL+ Y++ + + EVY +V L
Sbjct: 126 DFQVAIEFVNRIKARFGGDDRAYKKFLDILNMYRKETKSI----------NEVYQEVTLL 175
Query: 266 FEHQEDLLAEFGQFLPDAK-AVTKPEPAHEHH 296
F+ EDLL EF FLPD + +V+ +P + +
Sbjct: 176 FQDHEDLLGEFVHFLPDFRGSVSVNDPLFQRN 207
Score = 42.7 bits (96), Expect = 0.001
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 54 ALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIVGFNTF 113
A+ +++++K +F + Y FLDI+ ++ +T V V+ LF+ H +L+ F F
Sbjct: 130 AIEFVNRIKARFGGDDRAYKKFLDILNMYRKETKSINEVYQEVTLLFQDHEDLLGEFVHF 189
Query: 114 LP 115
LP
Sbjct: 190 LP 191
Score = 39.1 bits (87), Expect = 0.015
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 210 AIEYVNKIKSRFSRQPDKYKRFLEILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKLFEHQ 269
A+ Y+ +K F +KY+ FL ++ K+ +A++ V ++V LF+
Sbjct: 46 ALTYLKAVKDMFQDNKEKYETFLGVM----------KDFKAQRVDTNGVIARVKDLFKGY 95
Query: 270 EDLLAEFGQFLPDAKAVT-KPEPAHEHHPMTF 300
+DLL F FLP +T +PE P+ F
Sbjct: 96 DDLLLGFNTFLPKGYKITLQPEDEKPKKPVDF 127
Score = 33.1 bits (72), Expect = 0.99
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 908 SSPTEYYXXXXXXXXXXXXXXMESSAFEDAAREMLGIKAYPAYTLDKLV 956
S+ T+ Y +++ FED R ++G ++Y +TLDKLV
Sbjct: 904 STSTDSYTRFMEALYNLLDGSSDNTKFEDECRAIIGAQSYVLFTLDKLV 952
>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
protein similar to Sin3 protein [Yarrowia lipolytica]
GI:18076824; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 1173
Score = 121 bits (292), Expect = 2e-27
Identities = 69/211 (32%), Positives = 109/211 (51%), Gaps = 5/211 (2%)
Query: 451 DIDLSTCKRLGTSYCALPREAAARKCSGRTPLCKEVLNDTWVSFPTWSEDSTFVTSRKTQ 510
++DLS C + SY LP++ A S R L K+ LND VS + SED +F RK Q
Sbjct: 344 ELDLSECTQCTPSYRLLPKDYAVEIPSYRNTLGKKTLNDHLVSVTSGSEDYSFSHMRKNQ 403
Query: 511 YEEYIYRCEDERFELDVVIETNAATIRVLEGVQKKLSRMSGEDAARYRLDDCLGGHSPTV 570
YEE ++RCED+R+E+D+++ + ++ I+ +E + +K++ + C+ H +
Sbjct: 404 YEESLFRCEDDRYEMDMLLGSVSSAIKQVEILLEKMN----NNTISVDSTICIEKHLSAM 459
Query: 571 HQRALRRIYGDKVAVDIIAGXXXXXXXXXXXXXXXXXXKEEEWREAQKGFNKQWREQNEK 630
+ R + R+YGD +D++ K+EEW F K W E K
Sbjct: 460 NLRCIERLYGDN-GLDVMDLLKKNMHSALPVILTRLKQKQEEWARCHSDFQKVWAEVYAK 518
Query: 631 YYLKSLDHQGINFKQNDLKAMRSKTLFNEVE 661
+ KSLDH+ FKQ D K + +K L EV+
Sbjct: 519 NHHKSLDHRSFYFKQQDSKNLSTKCLVAEVK 549
Score = 89.4 bits (212), Expect = 1e-17
Identities = 41/68 (60%), Positives = 52/68 (76%)
Query: 53 DALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIVGFNT 112
DAL+YL VK F+ + Y FL++MKEFK+QTIDT GVI R+ LFKG+ +L++GFNT
Sbjct: 84 DALTYLKAVKDIFHDNKEKYESFLELMKEFKAQTIDTNGVIERIKVLFKGYRDLLLGFNT 143
Query: 113 FLPPGYKI 120
FLP GYKI
Sbjct: 144 FLPKGYKI 151
Score = 58.0 bits (134), Expect = 3e-08
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 10/77 (12%)
Query: 206 EFNHAIEYVNKIKSRFSRQPDKYKRFLEILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKL 265
+F AI +V KIK+RF YKRFL+IL+ Y++ ++++ EVY +V L
Sbjct: 165 DFKDAIGFVTKIKTRFGDDEHAYKRFLDILNLYRK----------EKKSISEVYEEVTML 214
Query: 266 FEHQEDLLAEFGQFLPD 282
F+ EDLL EF FLP+
Sbjct: 215 FKGHEDLLMEFVNFLPN 231
Score = 50.8 bits (116), Expect = 5e-06
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 48 RLKVEDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELI 107
R+ +DA+ ++ ++K +F Y FLDI+ ++ + V V+ LFKGH +L+
Sbjct: 163 RVDFKDAIGFVTKIKTRFGDDEHAYKRFLDILNLYRKEKKSISEVYEEVTMLFKGHEDLL 222
Query: 108 VGFNTFLP 115
+ F FLP
Sbjct: 223 MEFVNFLP 230
Score = 34.7 bits (76), Expect = 0.32
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 210 AIEYVNKIKSRFSRQPDKYKRFLEILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKLFEHQ 269
A+ Y+ +K F +KY+ FLE++ KE +A+ V ++ LF+
Sbjct: 85 ALTYLKAVKDIFHDNKEKYESFLELM----------KEFKAQTIDTNGVIERIKVLFKGY 134
Query: 270 EDLLAEFGQFLPDAKAVT 287
DLL F FLP +T
Sbjct: 135 RDLLLGFNTFLPKGYKIT 152
Score = 31.1 bits (67), Expect = 4.0
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 929 MESSAFEDAAREMLGIKAYPAYTLDKLV 956
++++ FED R + G ++Y +TLDKLV
Sbjct: 950 IDNTKFEDECRAIFGAQSYVLFTLDKLV 977
>At1g70030.1 68414.m08059 paired amphipathic helix repeat-containing
protein similar to Sin3 protein [Yarrowia lipolytica]
GI:18076824; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 160
Score = 82.2 bits (194), Expect = 2e-15
Identities = 38/85 (44%), Positives = 55/85 (64%)
Query: 47 QRLKVEDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPEL 106
++L DAL +L VK K+ ++Y+ FL IMK+F+ Q T VI++V LFKG PEL
Sbjct: 5 KKLTTTDALDFLHLVKTKYQDNREIYDSFLTIMKDFRGQRAKTCDVISKVKELFKGQPEL 64
Query: 107 IVGFNTFLPPGYKIEVQSNGQVSVS 131
++GFNTFLP G++I + + S S
Sbjct: 65 LLGFNTFLPTGFEITLSDDELTSNS 89
Score = 49.6 bits (113), Expect = 1e-05
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 11/75 (14%)
Query: 207 FNHAIEYVNKIKSRFSRQPDKYKRFLEILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKLF 266
F+ A E+VNK+K+RF D + FLE+L +++ ++ + E +Y +VA LF
Sbjct: 94 FDEAYEFVNKVKTRFQNN-DVFNSFLEVLKTHKKENKSVAE----------LYQEVAILF 142
Query: 267 EHQEDLLAEFGQFLP 281
+ DLL EF FLP
Sbjct: 143 QGHRDLLEEFHLFLP 157
Score = 45.2 bits (102), Expect = 2e-04
Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 52 EDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIVGFN 111
++A ++++VK +F V+N FL+++K K + + V+ LF+GH +L+ F+
Sbjct: 95 DEAYEFVNKVKTRFQNN-DVFNSFLEVLKTHKKENKSVAELYQEVAILFQGHRDLLEEFH 153
Query: 112 TFLP 115
FLP
Sbjct: 154 LFLP 157
Score = 33.9 bits (74), Expect = 0.57
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 10/78 (12%)
Query: 210 AIEYVNKIKSRFSRQPDKYKRFLEILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKLFEHQ 269
A+++++ +K+++ + Y FL I+ +D + +AK +V S+V +LF+ Q
Sbjct: 12 ALDFLHLVKTKYQDNREIYDSFLTIM-------KDFRGQRAKTC---DVISKVKELFKGQ 61
Query: 270 EDLLAEFGQFLPDAKAVT 287
+LL F FLP +T
Sbjct: 62 PELLLGFNTFLPTGFEIT 79
>At5g15030.1 68418.m01762 paired amphipathic helix repeat-containing
protein low similarity to transcriptional repressor
SIN3B [Mus musculus] GI:2921547; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 271
Score = 75.4 bits (177), Expect = 2e-13
Identities = 36/79 (45%), Positives = 51/79 (64%)
Query: 49 LKVEDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIV 108
L +DAL+YL ++K F+ Q Y+ FL+IM +FK+Q DT VI RV +L KGH LI+
Sbjct: 192 LTTDDALAYLKEIKDVFHDQKYKYHLFLEIMSDFKAQRTDTSVVIARVKDLLKGHNHLIL 251
Query: 109 GFNTFLPPGYKIEVQSNGQ 127
FN FLP G++I + +
Sbjct: 252 VFNKFLPHGFEITLDDEDE 270
Score = 30.7 bits (66), Expect = 5.3
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 210 AIEYVNKIKSRFSRQPDKYKRFLEILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKLFEHQ 269
A+ Y+ +IK F Q KY FLEI+ + +A++ V ++V L +
Sbjct: 197 ALAYLKEIKDVFHDQKYKYHLFLEIMSDF----------KAQRTDTSVVIARVKDLLKGH 246
Query: 270 EDLLAEFGQFLPDAKAVT 287
L+ F +FLP +T
Sbjct: 247 NHLILVFNKFLPHGFEIT 264
>At4g12020.1 68417.m01912 protein kinase family protein similar to
mitogen-activated protein kinase [Arabidopsis thaliana]
GI:1255448; contains Pfam profiles PF02671: Paired
amphipathic helix repeat, PF03106: WRKY DNA-binding
domain, PF00560: Leucine Rich Repeat, PF00069: Protein
kinase domain, PF00931: NB-ARC domain
Length = 1798
Score = 72.9 bits (171), Expect = 1e-12
Identities = 33/70 (47%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Query: 53 DALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIVGFNT 112
DAL+YL VK KF + Y+ FL+++ + K Q +DT GVI R+ +LFKGH +L++GFNT
Sbjct: 308 DALNYLKAVKDKFEDSEK-YDTFLEVLNDCKHQGVDTSGVIARLKDLFKGHDDLLLGFNT 366
Query: 113 FLPPGYKIEV 122
+L Y+I +
Sbjct: 367 YLSKEYQITI 376
>At1g24200.1 68414.m03052 paired amphipathic helix repeat-containing
protein similar to Sin3 protein [Yarrowia lipolytica]
GI:18076824; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 196
Score = 72.1 bits (169), Expect = 2e-12
Identities = 35/68 (51%), Positives = 44/68 (64%)
Query: 53 DALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIVGFNT 112
DAL YL VK KF Q + Y++FL IM ++K+Q ID GVI R+ L K L++GFN
Sbjct: 14 DALKYLRAVKAKFQGQREKYDEFLQIMIDYKTQRIDISGVIIRMKELLKEQQGLLLGFNA 73
Query: 113 FLPPGYKI 120
FLP GY I
Sbjct: 74 FLPNGYMI 81
Score = 47.2 bits (107), Expect = 6e-05
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 206 EFNHAIEYVNKIKSRFSRQPDKYKRFLEILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKL 265
E AI ++NKIK+RF YK L+IL+ Y++ + + VY +VA L
Sbjct: 94 ELGEAISFINKIKTRFQGDDRVYKSVLDILNMYRKDRKPI----------TAVYREVAIL 143
Query: 266 FEHQEDLLAEFGQFLP 281
F +LL EF FLP
Sbjct: 144 FLDHNNLLVEFTHFLP 159
Score = 45.2 bits (102), Expect = 2e-04
Identities = 21/72 (29%), Positives = 40/72 (55%)
Query: 44 TQFQRLKVEDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGH 103
+Q + +++ +A+S+++++K +F +VY LDI+ ++ V V+ LF H
Sbjct: 88 SQKKPVELGEAISFINKIKTRFQGDDRVYKSVLDILNMYRKDRKPITAVYREVAILFLDH 147
Query: 104 PELIVGFNTFLP 115
L+V F FLP
Sbjct: 148 NNLLVEFTHFLP 159
Score = 42.7 bits (96), Expect = 0.001
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 208 NHAIEYVNKIKSRFSRQPDKYKRFLEILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKLFE 267
N A++Y+ +K++F Q +KY FL+I+ Y+ D+ V ++ +L +
Sbjct: 13 NDALKYLRAVKAKFQGQREKYDEFLQIMIDYKTQRIDI----------SGVIIRMKELLK 62
Query: 268 HQEDLLAEFGQFLPDAKAVTKPEPAHEHHPM 298
Q+ LL F FLP+ +T E + P+
Sbjct: 63 EQQGLLLGFNAFLPNGYMITHHEQPSQKKPV 93
>At1g27220.1 68414.m03315 paired amphipathic helix repeat-containing
protein similar to transcriptional repressor SIN3B [Mus
musculus] GI:2921547; contains Pfam profile PF02671:
Paired amphipathic helix repeat
Length = 184
Score = 68.9 bits (161), Expect = 2e-11
Identities = 32/65 (49%), Positives = 41/65 (63%)
Query: 51 VEDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIVGF 110
V+DA +Y+ VK F+ P Y+DF+ IMK FK++ ID I V L KGH +LI GF
Sbjct: 12 VDDAYAYIRTVKSTFHNDPDKYDDFMAIMKNFKARKIDRNTCIEEVKELLKGHRDLISGF 71
Query: 111 NTFLP 115
N FLP
Sbjct: 72 NAFLP 76
Score = 35.1 bits (77), Expect = 0.25
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
Query: 210 AIEYVNKIKSRFSRQPDKYKRFLEILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKLFEHQ 269
A Y+ +KS F PDKY F+ I +K +A++ +V +L +
Sbjct: 15 AYAYIRTVKSTFHNDPDKYDDFMAI----------MKNFKARKIDRNTCIEEVKELLKGH 64
Query: 270 EDLLAEFGQFLP 281
DL++ F FLP
Sbjct: 65 RDLISGFNAFLP 76
>At1g27250.1 68414.m03319 paired amphipathic helix repeat-containing
protein weak similarity to transcriptional repressor
SIN3B [Mus musculus] GI:2921547; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 137
Score = 67.7 bits (158), Expect = 4e-11
Identities = 32/74 (43%), Positives = 45/74 (60%)
Query: 48 RLKVEDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELI 107
R +DA +YL V+ KF+ + Y+DF+ +M FK++ ID G I V L KGH +LI
Sbjct: 16 RATKDDAYAYLRAVRAKFHNDSKKYDDFVAVMTNFKARRIDRDGCIKEVEQLLKGHRDLI 75
Query: 108 VGFNTFLPPGYKIE 121
GFN FLP +I+
Sbjct: 76 SGFNAFLPKCLEIK 89
>At1g27280.1 68414.m03323 paired amphipathic helix repeat-containing
protein similar to transcription co-repressor Sin3
[Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 225
Score = 62.9 bits (146), Expect = 1e-09
Identities = 27/66 (40%), Positives = 40/66 (60%)
Query: 51 VEDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIVGF 110
++DA+SY++ VK F+ +P Y +F + + + + ID G ITRV L K H L+V
Sbjct: 79 IDDAVSYINTVKEAFHDEPAKYYEFFQLFYDIRYRLIDVAGGITRVEELLKAHKNLLVRL 138
Query: 111 NTFLPP 116
N FLPP
Sbjct: 139 NAFLPP 144
>At5g15040.1 68418.m01763 paired amphipathic helix repeat-containing
protein contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 87
Score = 61.3 bits (142), Expect = 3e-09
Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 56 SYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIVGFNTFLP 115
+Y +VK F+ Q + Y+ F +I+ + K++ I ++ LFK H ELI+GFNTFLP
Sbjct: 6 AYFMEVKDTFHDQIEKYDMFKNILLDLKARRIGRHTAFAQLKELFKEHNELIIGFNTFLP 65
Query: 116 PGYKIEVQSNGQVSVS 131
GYKI + + + S S
Sbjct: 66 TGYKIALDDDVEDSFS 81
Score = 30.3 bits (65), Expect = 7.0
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Query: 213 YVNKIKSRFSRQPDKYKRFLEILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKLFEHQEDL 272
Y ++K F Q +KY F IL DLK + + T ++Q+ +LF+ +L
Sbjct: 7 YFMEVKDTFHDQIEKYDMFKNIL-------LDLKARRIGRHT---AFAQLKELFKEHNEL 56
Query: 273 LAEFGQFLP 281
+ F FLP
Sbjct: 57 IIGFNTFLP 65
>At1g24220.1 68414.m03054 paired amphipathic helix repeat-containing
protein weak similarity to transcription co-repressor
Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 744
Score = 60.1 bits (139), Expect = 8e-09
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 51 VEDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIVGF 110
++DA SY+D VK F+ +P Y +FL ++ ++K++ +D VI RV L K H L++G
Sbjct: 174 LDDARSYIDSVKEAFHDEPAKYAEFLKLLNDYKARRLDADSVIARVDELTKDHRNLLLGL 233
Query: 111 NTFLPPGYK 119
L P K
Sbjct: 234 RAILLPAAK 242
Score = 47.6 bits (108), Expect = 4e-05
Identities = 19/69 (27%), Positives = 39/69 (56%)
Query: 47 QRLKVEDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPEL 106
Q + DA+SY++ VK +F+ +P +++F + E + ++ + R++ L G+P+L
Sbjct: 8 QEPTMADAVSYIESVKEEFHDEPAKFDEFRMRLNEVRDDRVEKDRITARINELISGNPKL 67
Query: 107 IVGFNTFLP 115
+G F P
Sbjct: 68 HLGSKVFFP 76
Score = 44.4 bits (100), Expect = 4e-04
Identities = 18/71 (25%), Positives = 37/71 (52%)
Query: 51 VEDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIVGF 110
+ + ++Y+ VK F +P +++FL +M + I+ R++ + KGHP L++
Sbjct: 500 IRETVTYIADVKEAFLDEPAKFHEFLRLMNDVCDHKIEEANGSARMAEIIKGHPRLLLVL 559
Query: 111 NTFLPPGYKIE 121
+ F P + E
Sbjct: 560 SVFFPKSKQYE 570
Score = 31.5 bits (68), Expect = 3.0
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Query: 211 IEYVNKIKSRFSR-QPDKYKRFLEILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKLFEHQ 269
+ ++NK+K+RF R F I+ Y+ G + KE V+ +V L +
Sbjct: 374 LNFMNKLKTRFQRIDTHVVGSFHSIMTMYKEGKKSRKE----------VHEEVCDLLYYH 423
Query: 270 EDLLAEFGQFLP 281
EDL A+F + P
Sbjct: 424 EDLRADFTRIFP 435
Score = 30.3 bits (65), Expect = 7.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 210 AIEYVNKIKSRFSRQPDKYKRFLEILHAYQRGHRD 244
A Y++ +K F +P KY FL++L+ Y+ D
Sbjct: 177 ARSYIDSVKEAFHDEPAKYAEFLKLLNDYKARRLD 211
>At5g35610.1 68418.m04249 paired amphipathic helix repeat-containing
protein weak similarity to SP|P22579 Paired amphipathic
helix protein {Saccharomyces cerevisiae}; contains Pfam
profile PF02671: Paired amphipathic helix repeat
Length = 155
Score = 59.3 bits (137), Expect = 1e-08
Identities = 32/72 (44%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 57 YLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIVGFNTFLPP 116
YL VK K + ++Y FL +M + +Q ID GV + V LFK E I GFNTFLP
Sbjct: 14 YLKIVKNKLQNKREIYVRFLQVMTAYSAQRIDPSGVKSVVKELFKEDQEPISGFNTFLPK 73
Query: 117 GYKI--EVQSNG 126
G++I E NG
Sbjct: 74 GFEIKPECDQNG 85
Score = 31.5 bits (68), Expect = 3.0
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 11/79 (13%)
Query: 212 EYVNKIKSRFSRQPDKYKRFLEILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKLFEHQED 271
+Y+ +K++ + + Y RFL+++ AY A++ V S V +LF+ ++
Sbjct: 13 KYLKIVKNKLQNKREIYVRFLQVMTAY----------SAQRIDPSGVKSVVKELFKEDQE 62
Query: 272 LLAEFGQFLPDAKAVTKPE 290
++ F FLP + KPE
Sbjct: 63 PISGFNTFLPKGFEI-KPE 80
>At1g24250.1 68414.m03057 paired amphipathic helix repeat-containing
protein weak similarity to transcriptional repressor
SIN3B [Mus musculus] GI:2921547; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 252
Score = 59.3 bits (137), Expect = 1e-08
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 51 VEDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIVGF 110
++DA SYL VK F+ +P Y + L ++K+FK++ +D VI RV L K H L+ GF
Sbjct: 118 IDDATSYLIAVKEAFHDEPAKYGEMLKLLKDFKARRVDAACVIARVEELMKDHLNLLFGF 177
Query: 111 NTFL 114
FL
Sbjct: 178 CVFL 181
Score = 47.6 bits (108), Expect = 4e-05
Identities = 55/246 (22%), Positives = 93/246 (37%), Gaps = 24/246 (9%)
Query: 51 VEDALSYLDQVKYKFNT-QPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIVG 109
+ED +Y++ V+ +P + F+ + + F + I P R+ +L K HP L +G
Sbjct: 12 LEDVKAYVNAVEVALQEMEPARFGMFVRLFRGFTAPRIGMPTFSARMQDLLKDHPSLCLG 71
Query: 110 FNTFLPPGYKIEVQSNGQ------VSVSMPSPTAIGSGVLLGVHHTQQPQLVHLLPVPHA 163
N LPP Y++ + V S+P P + L T +L+ V A
Sbjct: 72 LNVLLPPEYQLTIPPEASEEFHKVVGRSVPVPPKVVGRSLPRPEPTIDDATSYLIAVKEA 131
Query: 164 --EECRPVGPALQHLSH---AAPDPALHHXXXXXXXXXXXXXXXXXXEFNHA-IEYVNKI 217
+E G L+ L D A F A + K+
Sbjct: 132 FHDEPAKYGEMLKLLKDFKARRVDAACVIARVEELMKDHLNLLFGFCVFLSATTSFTTKL 191
Query: 218 KSRFSRQPDK-YKRFLEILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKLFEHQEDLLAEF 276
K+RF + L+I+ Y G++ ++ + Y +V L + +DL+ E
Sbjct: 192 KARFQGDGSQVVDSVLQIMRMYGEGNK----------SKHDAYQEVVALVQGHDDLVMEL 241
Query: 277 GQFLPD 282
Q L D
Sbjct: 242 SQILTD 247
>At1g24230.1 68414.m03055 paired amphipathic helix repeat-containing
protein weak similarity to transcriptional co-repressor
SIN3A [Drosophila melanogaster] GI:2570794; contains
Pfam profile PF02671: Paired amphipathic helix repeat
Length = 245
Score = 57.6 bits (133), Expect = 4e-08
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 51 VEDALSYLDQVKYKFNT-QPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIVG 109
+++A SY++ VK F QP Y +FLDIM + ++ +D V+ R+ L K H L++
Sbjct: 12 IDEATSYINAVKEAFGADQPAKYREFLDIMLDLRANRVDLATVVPRMRELLKDHVNLLLR 71
Query: 110 FNTFLP 115
FN FLP
Sbjct: 72 FNAFLP 77
Score = 55.2 bits (127), Expect = 2e-07
Identities = 21/65 (32%), Positives = 37/65 (56%)
Query: 53 DALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIVGFNT 112
D SY+ +K F +P Y FL+I+ ++ ++ +D P + R++ L K H L++GF+
Sbjct: 86 DVRSYIYSLKESFRDEPAKYAQFLEILNDYSARRVDAPSAVARMTELMKDHRNLVLGFSV 145
Query: 113 FLPPG 117
L G
Sbjct: 146 LLSTG 150
Score = 36.7 bits (81), Expect = 0.080
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 11/65 (16%)
Query: 213 YVNKIKSRFSRQPDK-YKRFLEILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKLFEHQED 271
+++K+K+RF Y+ FLEIL YQ+G++ + + +Y +V L + ED
Sbjct: 172 FISKLKARFQGNDGHVYESFLEILTMYQQGNKSVND----------LYQEVVALLQGHED 221
Query: 272 LLAEF 276
L+ EF
Sbjct: 222 LVMEF 226
Score = 31.9 bits (69), Expect = 2.3
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 11/75 (14%)
Query: 208 NHAIEYVNKIKSRFSR-QPDKYKRFLEILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKLF 266
+ A Y+N +K F QP KY+ FL+I+ DL+ + T V ++ +L
Sbjct: 13 DEATSYINAVKEAFGADQPAKYREFLDIM-------LDLRANRVDLAT---VVPRMRELL 62
Query: 267 EHQEDLLAEFGQFLP 281
+ +LL F FLP
Sbjct: 63 KDHVNLLLRFNAFLP 77
Score = 31.9 bits (69), Expect = 2.3
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 207 FNHAIEYVNKIKSRFSRQPDKYKRFLEILHAYQRGHRDLKEPQAK 251
F+ Y+ +K F +P KY +FLEIL+ Y D A+
Sbjct: 84 FHDVRSYIYSLKESFRDEPAKYAQFLEILNDYSARRVDAPSAVAR 128
>At1g24210.1 68414.m03053 paired amphipathic helix repeat-containing
protein similar to transcriptional repressor SIN3B [Mus
musculus] GI:2921547; contains Pfam profile PF02671:
Paired amphipathic helix repeat
Length = 155
Score = 57.6 bits (133), Expect = 4e-08
Identities = 26/68 (38%), Positives = 39/68 (57%)
Query: 49 LKVEDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIV 108
L +DA SY+ VK F+ +P Y +F+ ++ +D VI RV L K H +L++
Sbjct: 10 LTKDDAHSYIIAVKETFHDEPTKYQEFIKLLNGVCDHRVDKYSVIARVEELMKDHQDLLL 69
Query: 109 GFNTFLPP 116
GF+ FLPP
Sbjct: 70 GFSVFLPP 77
Score = 31.5 bits (68), Expect = 3.0
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Query: 210 AIEYVNKIKSRFSRQPDKYKRFLEILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKLFEHQ 269
A Y+ +K F +P KY+ F+++L+ HR K V ++V +L +
Sbjct: 15 AHSYIIAVKETFHDEPTKYQEFIKLLNGVC-DHRVDK---------YSVIARVEELMKDH 64
Query: 270 EDLLAEFGQFLP 281
+DLL F FLP
Sbjct: 65 QDLLLGFSVFLP 76
>At1g23810.1 68414.m03003 paired amphipathic helix repeat-containing
protein low similarity to transcriptional repressor
SIN3B [Mus musculus] GI:2921547; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 241
Score = 57.2 bits (132), Expect = 5e-08
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 51 VEDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIVGF 110
++DA SYL VK F+ +P Y + L ++ +FK++ ++ VI RV L K H L+ GF
Sbjct: 107 IDDATSYLIAVKEAFHDEPAKYEEMLKLLNDFKARRVNAASVIARVEELMKDHSNLLFGF 166
Query: 111 NTFL 114
FL
Sbjct: 167 CVFL 170
Score = 42.7 bits (96), Expect = 0.001
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 51 VEDALSYLDQVKYKFN-TQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIVG 109
+ED +Y++ VK +P Y +FL + E ++ + R+ +L K HP L +G
Sbjct: 12 LEDGKAYVNAVKVALEEAEPAKYQEFLRLFHEVIARRMGMATFSARMQDLLKDHPSLCLG 71
Query: 110 FNTFLPPGYK 119
N L P Y+
Sbjct: 72 LNVMLAPEYQ 81
>At1g27260.1 68414.m03321 paired amphipathic helix repeat-containing
protein low similarity to transcriptional repressor
SIN3B [Mus musculus] GI:2921547; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 222
Score = 54.4 bits (125), Expect = 4e-07
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 51 VEDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIVGF 110
+EDA SYL+ VK F+ +P Y + L ++ + +++ +D I V L K H L+ GF
Sbjct: 91 IEDATSYLNSVKRAFHDEPAKYEELLKLLNDIEARRVDAASFIASVEELMKDHQTLLNGF 150
Query: 111 NTFL 114
+ FL
Sbjct: 151 SVFL 154
Score = 51.2 bits (117), Expect = 3e-06
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 54 ALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIVGFNTF 113
A +Y+ V+ +F +P Y FL ++++ +++ ID + L K H +L++GFN
Sbjct: 4 AFAYIIAVRDRFRDEPAKYRQFLSLLRDRRARRIDKATFFVGLVELIKDHLDLLLGFNAL 63
Query: 114 LPPGYKIEVQSNGQVSV---SMPSPTAI 138
LP ++I + G +V S+P T I
Sbjct: 64 LPARFQIPITPAGFQNVVGRSVPPETTI 91
Score = 31.9 bits (69), Expect = 2.3
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Query: 208 NHAIEYVNKIKSRFSRQPDKYKRFLEILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKLFE 267
N A Y+ ++ RF +P KY++FL + L++ +A++ + + + +L +
Sbjct: 2 NKAFAYIIAVRDRFRDEPAKYRQFLSL----------LRDRRARRIDKATFFVGLVELIK 51
Query: 268 HQEDLLAEFGQFLP 281
DLL F LP
Sbjct: 52 DHLDLLLGFNALLP 65
>At1g27240.1 68414.m03317 paired amphipathic helix repeat-containing
protein low similarity to transcription co-repressor
Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 186
Score = 54.4 bits (125), Expect = 4e-07
Identities = 22/65 (33%), Positives = 37/65 (56%)
Query: 51 VEDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIVGF 110
+ DA SY+ VK F+ +P Y +F+ +M + + +D I +++ L KGHP L+ G
Sbjct: 12 LSDAHSYITAVKEAFHDEPTKYEEFIKLMNDIRDHGVDKASGIAKLTELIKGHPRLLRGL 71
Query: 111 NTFLP 115
+ F P
Sbjct: 72 SFFFP 76
>At1g27270.1 68414.m03322 paired amphipathic helix repeat-containing
protein contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 241
Score = 54.0 bits (124), Expect = 5e-07
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 51 VEDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIVGF 110
++DA SYL+ VK F+ +P Y + ++ + K++ I+ VI R+ L K H L++GF
Sbjct: 111 MDDATSYLNAVKEAFHDEPAKYMEITKLLTDLKARRINAASVIARMEELLKDHLNLLLGF 170
Query: 111 NTFLPP 116
FL P
Sbjct: 171 CVFLSP 176
>At1g79950.1 68414.m09344 helicase-related similar to BRCA1-binding
helicase-like protein BACH1 (GI:13661819) Homo sapiens].;
contains similarity to helicase-like protein NHL
GI:6969265 from (Homo sapiens)
Length = 1040
Score = 40.7 bits (91), Expect = 0.005
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 50 KVEDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKG--HPELI 107
K A ++L QVK K NT+ Y F+ M+ K + I V+ + LF G L+
Sbjct: 950 KEASASAFLSQVKEKLNTEE--YKKFIGYMQALKKKEIKLANVMQSIVQLFCGSERDHLL 1007
Query: 108 VGFNTFLPPGYK 119
+GF F+P Y+
Sbjct: 1008 MGFKDFVPVKYR 1019
>At3g28870.1 68416.m03604 hypothetical protein
Length = 355
Score = 33.9 bits (74), Expect = 0.57
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 480 TPLCKEVLNDTWVSFPTWSEDS-TFVTSRK--TQYEEYIYRCEDERFELDVVIETNAATI 536
T LCK++ + +++ +++ T V K T EE +Y+ EDE FE+D+++ + +
Sbjct: 116 TNLCKDLKSQ--IAYGDKEDEAVTRVKGHKNLTDIEEDMYKWEDEMFEVDMLMRVLTSAV 173
Query: 537 RVLEGVQKKLSRMSGEDAARYRLDDCLGGHS--PTV---HQRALRRI 578
+ V K + A YR + L G TV HQRAL I
Sbjct: 174 ESAKEVIKGEMELKDLGAKFYRCVEMLYGEDMFETVTEDHQRALPMI 220
>At3g24260.1 68416.m03047 hypothetical protein
Length = 374
Score = 32.7 bits (71), Expect = 1.3
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 8/53 (15%)
Query: 479 RTPLCKEVLNDTWVSFPTWSEDSTFVTSRK--TQYEEYIYRCEDERFELDVVI 529
+TP+ VLN+TWV +S + ++K T E+ +Y ED+ FELD+++
Sbjct: 226 QTPVSSTVLNNTWVV------NSYDIQAQKNLTDIEKDMYNWEDQMFELDMLV 272
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 30.7 bits (66), Expect = 5.3
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 133 PSPTAIGSGVLLGVHHTQQPQLVHLLPVPHAEECRPVGPALQHLSHAAPDP 183
P+P S VHH+ P ++H P P + E P + +S+A+P P
Sbjct: 706 PAPVVHHSPPPPMVHHSPPPPVIHQSPPPPSPEYEGPLPPVIGVSYASPPP 756
>At1g10250.1 68414.m01155 expressed protein weak similarity to
transcription co-repressor Sin3 [Xenopus laevis]
GI:4960210
Length = 77
Score = 30.7 bits (66), Expect = 5.3
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 930 ESSAFEDAAREMLGIKAYPAYTLDKLV 956
+++ FED R + G ++Y +TLDKLV
Sbjct: 14 DNTKFEDECRAIFGAQSYVLFTLDKLV 40
>At5g09910.1 68418.m01146 GTP-binding protein-related contains weak
similarity to GTP-binding protein yptV3.
(Swiss-Prot:P36862) [Volvox carteri]
Length = 431
Score = 30.3 bits (65), Expect = 7.0
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 74 DFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIVGFNTFLPPGYKIEVQSN 125
+++ +MK+F+S+ I +I + NLF+G L FN + + E+Q N
Sbjct: 323 EYMGLMKQFRSRHIQGDELIKSLQNLFQGDVVLSQMFNALMKTEIQ-ELQGN 373
>At2g33735.1 68415.m04135 DNAJ heat shock N-terminal
domain-containing protein similar to SP|P30725 Chaperone
protein dnaJ Clostridium acetobutylicum; contains Pfam
profile PF00226 DnaJ domain
Length = 119
Score = 30.3 bits (65), Expect = 7.0
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 220 RFSRQPDKYKRFLEILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKLFEHQEDLLAEFGQF 279
+F + RF EI AYQ L +P A+Q+ +++ ++ +++EH +LL E+ +
Sbjct: 53 KFKEEDSATSRFQEINEAYQ----VLSDPIARQEYDKK---RMRRIYEHNTELLNEYKEL 105
Query: 280 L 280
+
Sbjct: 106 I 106
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,633,210
Number of Sequences: 28952
Number of extensions: 725407
Number of successful extensions: 1934
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1806
Number of HSP's gapped (non-prelim): 105
length of query: 1039
length of database: 12,070,560
effective HSP length: 88
effective length of query: 951
effective length of database: 9,522,784
effective search space: 9056167584
effective search space used: 9056167584
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)
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