BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA000204-TA|BGIBMGA000204-PA|IPR003822|Paired amphipathic helix, IPR013194|Histone deacetylase interacting (1039 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 169 2e-42 SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 150 1e-36 SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 129 2e-30 SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 29 2.5 SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 29 4.4 SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 28 7.7 >SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1522 Score = 169 bits (410), Expect = 2e-42 Identities = 106/325 (32%), Positives = 157/325 (48%), Gaps = 40/325 (12%) Query: 339 DYSFFERARKALRSQQVYDNFLRCLLLFTNEIISSSELLSVTSPFLCRHPELQRWLHDFV 398 + F E AR+ L ++ Y+ F++ L L++ E+ + L+ F + L WL D V Sbjct: 514 ELEFLEHARQYLANESKYNEFIKLLELYSQEVFDKNALVERCYVFFGSNEHLMNWLKDLV 573 Query: 399 GXXXXXXXXXXXXXXGYPWTNPIPVEPRPRYESVGALGAQMRNDRPQGDMAMDIDLSTCK 458 Y NPIPV PRPR +DL+ CK Sbjct: 574 K---------------YNPANPIPV-PRPR-----------------------VDLTQCK 594 Query: 459 RLGTSYCALPREAAARKCSGRTPLCKEVLNDTWVSFPTW-SEDSTFVTSRKTQYEEYIYR 517 G SY LP+ CSGR LC +LND WVSFPT SEDS F+ RK Q+EE +++ Sbjct: 595 SCGPSYRLLPKIELLLPCSGRDDLCWTILNDAWVSFPTLASEDSGFIAHRKNQFEENLHK 654 Query: 518 CEDERFELDVVIETNAATIRVLEGVQKKLSRMSGEDAARYRLDDCLGGHSPTVHQRALRR 577 E+ER+E D I N I +L+ K+ +MS + A + L LGG S +++ + +++ Sbjct: 655 LEEERYEYDRHIGANMRFIELLQIHADKMLKMSEVEKANWTLPSNLGGKSVSIYHKVIKK 714 Query: 578 IYGDKVAVDIIAGXXXXXXXXXXXXXXXXXXKEEEWREAQKGFNKQWREQNEKYYLKSLD 637 +YG + A II K+ EWR Q +N+ W + EK + +SLD Sbjct: 715 VYGKEHAQQIIENLQKNPSVTIPIVLERLKKKDREWRSLQNHWNELWHDIEEKNFYRSLD 774 Query: 638 HQGINFKQNDLKAMRSKTLFNEVES 662 HQG++FK D K+ K L +E+ + Sbjct: 775 HQGVSFKSVDKKSTTPKFLISELRN 799 Score = 164 bits (399), Expect = 5e-41 Identities = 100/249 (40%), Positives = 135/249 (54%), Gaps = 21/249 (8%) Query: 45 QFQRLKVEDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHP 104 ++++L V DALSYLD VK +F+ +P++YN+FLDIMKEFKSQ I+TP VITRVS LF G+P Sbjct: 176 EYRQLNVTDALSYLDLVKLQFHQEPEIYNEFLDIMKEFKSQAIETPEVITRVSKLFAGYP 235 Query: 105 ELIVGFNTFLPPGYKIEVQSNGQVSVS-MPSPTAIGSGVLLGVHHTQQPQLVH--LLPVP 161 LI GFNTFLPPGY IE+ S S++ + T G ++ + T P H P+P Sbjct: 236 NLIQGFNTFLPPGYSIEISSADPGSLAGIHITTPQGPLMINDLGKTTAPPPPHGSTTPLP 295 Query: 162 HAEECRPVGPALQHLSHAA---PDPALHHXXXXXXXXX-----XXXXXXXXXEFNHAIEY 213 A + SH P P+ + + AI + Sbjct: 296 AAASYTSMNMKQSSASHPVLQPPAPSTLQFNPSPSPAAPSYPPVDASVKQAADLDQAINF 355 Query: 214 VNKIKSRFSRQPDKYKRFLEILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKLFEHQEDLL 273 VN +K+RFS +P+ Y FL+IL +YQ R + Q VY QV++LF DLL Sbjct: 356 VNNVKNRFSHKPEAYNSFLDILKSYQHDQRPI----------QLVYFQVSQLFAEAPDLL 405 Query: 274 AEFGQFLPD 282 EF +FLPD Sbjct: 406 EEFKRFLPD 414 Score = 53.2 bits (122), Expect = 2e-07 Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 13/143 (9%) Query: 47 QRLKVEDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPEL 106 Q ++ A+++++ VK +F+ +P+ YN FLDI+K ++ V +VS LF P+L Sbjct: 345 QAADLDQAINFVNNVKNRFSHKPEAYNSFLDILKSYQHDQRPIQLVYFQVSQLFAEAPDL 404 Query: 107 IVGFNTFLPP---GYKIEVQSNGQV-----SVSMP--SPTAIGSGVLLGVHHTQQPQLVH 156 + F FLP E Q V + + P SP+A + L + P Sbjct: 405 LEEFKRFLPDVSVNAPAETQDKSTVVPQESATATPKRSPSATPTSALPPIGKFAPPTTAK 464 Query: 157 LLPVPHAEECRPVGPALQHLSHA 179 P P E R PA+Q +H+ Sbjct: 465 AQPAP---EKRRGEPAVQTRNHS 484 Score = 37.9 bits (84), Expect = 0.007 Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 10/77 (12%) Query: 210 AIEYVNKIKSRFSRQPDKYKRFLEILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKLFEHQ 269 A+ Y++ +K +F ++P+ Y FL+I +KE +++ EV ++V+KLF Sbjct: 185 ALSYLDLVKLQFHQEPEIYNEFLDI----------MKEFKSQAIETPEVITRVSKLFAGY 234 Query: 270 EDLLAEFGQFLPDAKAV 286 +L+ F FLP ++ Sbjct: 235 PNLIQGFNTFLPPGYSI 251 Score = 31.5 bits (68), Expect = 0.63 Identities = 13/29 (44%), Positives = 21/29 (72%) Query: 929 MESSAFEDAAREMLGIKAYPAYTLDKLVS 957 ++ + FEDA R + GI A+ YT++KLV+ Sbjct: 1086 IDQNGFEDALRCLYGIHAFRLYTVEKLVT 1114 >SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces pombe|chr 2|||Manual Length = 1154 Score = 150 bits (363), Expect = 1e-36 Identities = 98/255 (38%), Positives = 137/255 (53%), Gaps = 28/255 (10%) Query: 49 LKVEDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIV 108 L V DALSYL+ VKY F+ + ++YN FL+IM++FKSQ +DT GVI RVS LF G+P+LI Sbjct: 113 LDVNDALSYLELVKYYFSERREIYNRFLEIMRDFKSQALDTLGVINRVSELFNGYPQLIE 172 Query: 109 GFNTFLPPGYKIEVQSNGQVSVSMPSPTAIGSGVLLGVHHTQQPQLVHLLPV-PHAEECR 167 GFNTFLP GYKIEVQ + S S +G+ + H Q + LPV P E+ R Sbjct: 173 GFNTFLPSGYKIEVQLDS----SNTSVVRVGTPM----HPLPQQGVQSTLPVAPSNEDQR 224 Query: 168 PVGPALQHLSHAAPDPALHHXXXXXXXXXXXXXXXXXXEFNHAIEYVNKIKSRFSRQPDK 227 + + + P P+ + +FN+AI Y+NK+K+R+ D Sbjct: 225 TMESTSP--TDSQPQPSAPNLVSSTENEKPRV------DFNYAIAYMNKVKARYPPNSDT 276 Query: 228 YKRFLEILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKLFEHQEDLLAEFGQFLPDAKAVT 287 Y FL +L YQ+ + + E +A+ VA++F+ DLL EF FLPD T Sbjct: 277 YMEFLGVLRTYQKAQKSIFEVRAR----------VAEIFKDSPDLLEEFKLFLPDNVDST 326 Query: 288 KPE-PAHEHHPMTFP 301 +P P + P P Sbjct: 327 EPSTPNVQKSPNRLP 341 Score = 63.7 bits (148), Expect = 1e-10 Identities = 46/213 (21%), Positives = 89/213 (41%), Gaps = 6/213 (2%) Query: 456 TCKRLGTSYCALPREAAARKCSGRTPLCKEVLNDTWVSFPTWSEDSTFVTSRKTQYEEYI 515 T + + +Y LP KCSGR L VLND ++S + + QY + + Sbjct: 492 TFECISLTYRKLPDSWKQDKCSGRDDLDNSVLNDDYISVAPKPSHVKNIMHHENQYLQAL 551 Query: 516 YRCEDERFELDVVIETNAATIRVLEGVQKKLSRMSGEDAARYRLDDCLGGHSPTVHQRAL 575 EDER++ D V+ T + I++L + E A + L+ S + + AL Sbjct: 552 QLVEDERYDYDRVLNTTESAIKILANFCEPTIHEHLETALQ-ELE-----RSKRIIKNAL 605 Query: 576 RRIYGDKVAVDIIAGXXXXXXXXXXXXXXXXXXKEEEWREAQKGFNKQWREQNEKYYLKS 635 +YG + A + K++EWR +++ ++K WR+ +K + Sbjct: 606 IIVYGKEHANLALDTLFKKLPTAAPVLLKRIKTKDQEWRRSKREWSKIWRQIEKKNAQAA 665 Query: 636 LDHQGINFKQNDLKAMRSKTLFNEVESAYAARR 668 D + + D + + + +++ Y ++ Sbjct: 666 FDDRYCRIEGRDRRGLSYSRILRDIDDIYQRQK 698 Score = 42.7 bits (96), Expect = 3e-04 Identities = 19/68 (27%), Positives = 37/68 (54%) Query: 48 RLKVEDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELI 107 R+ A++Y+++VK ++ Y +FL +++ ++ V RV+ +FK P+L+ Sbjct: 253 RVDFNYAIAYMNKVKARYPPNSDTYMEFLGVLRTYQKAQKSIFEVRARVAEIFKDSPDLL 312 Query: 108 VGFNTFLP 115 F FLP Sbjct: 313 EEFKLFLP 320 >SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst2|Schizosaccharomyces pombe|chr 1|||Manual Length = 1075 Score = 129 bits (312), Expect = 2e-30 Identities = 69/202 (34%), Positives = 104/202 (51%), Gaps = 1/202 (0%) Query: 461 GTSYCALPREAAARKCSGRTPLCKEVLNDTWVSFPTW-SEDSTFVTSRKTQYEEYIYRCE 519 G SY LP E CSGR +LND WVS PTW SE+S F+ RKT YEE + + E Sbjct: 338 GPSYRLLPVEERNISCSGRDDFAWGILNDDWVSHPTWASEESGFIVQRKTPYEEAMTKLE 397 Query: 520 DERFELDVVIETNAATIRVLEGVQKKLSRMSGEDAARYRLDDCLGGHSPTVHQRALRRIY 579 +ER+E D IE + TI+ L+ +Q +++ + E+ Y L++ LG S +++++ ++ +Y Sbjct: 398 EERYEFDRHIEATSWTIKSLKKIQNRINELPEEERETYTLEEGLGLPSKSIYKKTIKLVY 457 Query: 580 GDKVAVDIIAGXXXXXXXXXXXXXXXXXXKEEEWREAQKGFNKQWREQNEKYYLKSLDHQ 639 + A ++ K EEW+ ++ WR K Y KSLD Q Sbjct: 458 TSEHAEEMFKALERMPCLTLPLVISRLEEKNEEWKSVKRSLQPGWRSIEFKNYDKSLDSQ 517 Query: 640 GINFKQNDLKAMRSKTLFNEVE 661 + FK D K + SK L E + Sbjct: 518 CVYFKARDKKNVSSKFLLAEAD 539 Score = 55.6 bits (128), Expect = 3e-08 Identities = 22/74 (29%), Positives = 45/74 (60%) Query: 53 DALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIVGFNT 112 D +++ ++ + +P VY+ F+D++K ++ +D PG I R+S + + +P+L+ N Sbjct: 38 DIKAFVQKLGQRLCHRPYVYSAFMDVVKALHNEIVDFPGFIERISVILRDYPDLLEYLNI 97 Query: 113 FLPPGYKIEVQSNG 126 FLP YK + ++G Sbjct: 98 FLPSSYKYLLSNSG 111 Score = 34.3 bits (75), Expect = 0.089 Identities = 16/62 (25%), Positives = 32/62 (51%) Query: 54 ALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIVGFNTF 113 A+ ++ +V+ + P+ + D +++FK+ + T V++L HP L F+ F Sbjct: 145 AIGFVSRVRRALLSNPEQFFKLQDSLRKFKNSECSLSELQTIVTSLLAEHPSLAHEFHNF 204 Query: 114 LP 115 LP Sbjct: 205 LP 206 Score = 34.3 bits (75), Expect = 0.089 Identities = 16/28 (57%), Positives = 19/28 (67%) Query: 929 MESSAFEDAAREMLGIKAYPAYTLDKLV 956 ++ SAFED R G KAY YT+DKLV Sbjct: 824 VDQSAFEDYLRFYYGNKAYKIYTIDKLV 851 Score = 32.3 bits (70), Expect = 0.36 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 342 FFERARKALRSQ-QVYDNFLRCLLLFTNEIISSSELLSVTSPFLCRHPELQRWLHDFV 398 F R R+AL S + + L F N S SEL ++ + L HP L H+F+ Sbjct: 148 FVSRVRRALLSNPEQFFKLQDSLRKFKNSECSLSELQTIVTSLLAEHPSLAHEFHNFL 205 >SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces pombe|chr 1|||Manual Length = 926 Score = 29.5 bits (63), Expect = 2.5 Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 5/55 (9%) Query: 504 VTSRKTQY-EEYIYRCEDE----RFELDVVIETNAATIRVLEGVQKKLSRMSGED 553 +T+RKT + + +I R +DE R ELD+V + N + L+G ++K+ + E+ Sbjct: 542 LTNRKTSFTDSHILRLQDEVNQLRNELDLVNKRNEDLLIELQGKEEKIQYLETEN 596 >SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster type |Schizosaccharomyces pombe|chr 2|||Manual Length = 827 Score = 28.7 bits (61), Expect = 4.4 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Query: 207 FNHAIEYVNKIKSRFSRQPDKYKRFLEILHAYQRGHRDLKEPQAK 251 +N+ Y K R P+KY FLE+ Y RG + +P K Sbjct: 38 YNYECTYGQPFK-RLRHAPEKYIEFLELRLKYLRGLAEESDPNLK 81 >SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1|Schizosaccharomyces pombe|chr 2|||Manual Length = 920 Score = 27.9 bits (59), Expect = 7.7 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 7/64 (10%) Query: 53 DALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIVGFNT 112 D+LSY+D Y+F++QP +Y + ++M + S + + + R N + +VGF T Sbjct: 692 DSLSYVD---YRFSSQPTIYETY-ELMND--SASFEDMSLECR-DNCANAFQDNLVGFPT 744 Query: 113 FLPP 116 P Sbjct: 745 ISNP 748 Database: spombe Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.402 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,811,435 Number of Sequences: 5004 Number of extensions: 139695 Number of successful extensions: 429 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 396 Number of HSP's gapped (non-prelim): 27 length of query: 1039 length of database: 2,362,478 effective HSP length: 80 effective length of query: 959 effective length of database: 1,962,158 effective search space: 1881709522 effective search space used: 1881709522 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits) S2: 59 (27.9 bits)
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