Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000204-TA|BGIBMGA000204-PA|IPR003822|Paired amphipathic
helix, IPR013194|Histone deacetylase interacting
(1039 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0002 - 8097-8246,8384-8495,8572-8735,9367-9519,9603-9732,9... 160 5e-39
01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-51... 143 6e-34
05_07_0305 - 29097478-29097598,29097766-29097866,29098136-290982... 93 1e-18
08_02_0284 - 15305062-15305170,15305299-15305460,15306348-153064... 62 2e-09
02_05_0063 - 25523140-25524405 50 7e-06
11_04_0011 - 12147113-12147278,12148216-12149145,12149463-121498... 33 1.2
>05_01_0002 -
8097-8246,8384-8495,8572-8735,9367-9519,9603-9732,
9802-9902,10016-10651,10820-10899,11014-11673,
11787-12041,12154-12281,12515-12669,12735-12919,
13020-13049,13164-13239,13371-13504,13703-13994,
14400-14567,14647-14745,14843-15014,15103-15281
Length = 1352
Score = 160 bits (389), Expect = 5e-39
Identities = 105/345 (30%), Positives = 168/345 (48%), Gaps = 12/345 (3%)
Query: 330 EAAKLATIHDYSFFERARKALRSQQVYDNFLRCLLLFTNEIISSSELLSVTSPFLCRHPE 389
+A K A ++ F E+ ++ L + Y FL+CL +++ EII+ SEL ++ + L +P+
Sbjct: 300 DALKSAYTKEFRFCEKVKEKLEPE-AYQEFLKCLHIYSQEIITRSELKNLVNDILQHYPD 358
Query: 390 LQRWLHDFVGXXXXXXXXXXXXXXGYPWTNPIP-VEPRPRYESV-GALG-AQMRNDRPQG 446
L +DF+ + + VE S GA A + + +
Sbjct: 359 LMNGFNDFLEQCENIDAFLEGVFSKRKTSQIVKIVEKGSALNSKEGATHKATTFSSKDKY 418
Query: 447 DMAM---DIDLSTCKRLGTSYCALPREAAARKCSGRTPLCKEVLNDTWVSFPTWSEDSTF 503
++ ++DLS C+R SY LP+ S RT L VLND WVS + SED +F
Sbjct: 419 NLCKPISELDLSNCQRCTPSYRLLPKNYPMPPASCRTDLGASVLNDLWVSVTSGSEDYSF 478
Query: 504 VTSRKTQYEEYIYRCEDERFELDVVIETNAATIRVLEGVQKKLSRMSGEDAARYRLDDCL 563
RK QYEE ++RCED+RFELD+++E+ I+ +E + +K+ S + + R+D+
Sbjct: 479 KHMRKNQYEESLFRCEDDRFELDMLLESVIVAIKRVEELIEKMQDNSIKPDSPIRIDE-- 536
Query: 564 GGHSPTVHQRALRRIYGDKVAVDIIAGXXXXXXXXXXXXXXXXXXKEEEWREAQKGFNKQ 623
H ++ R + R+YGD +D++ K+EEW + FNK
Sbjct: 537 --HLTPLNLRCIERLYGDH-GLDVMDVLRKNASVALPVILTRLKQKQEEWSRCRSDFNKV 593
Query: 624 WREQNEKYYLKSLDHQGINFKQNDLKAMRSKTLFNEVESAYAARR 668
W E K Y KSLDH+ FKQ D K + +K L ++ +R
Sbjct: 594 WAEIYAKNYHKSLDHRSFYFKQQDTKNLSTKALLAAIKEVNEKKR 638
Score = 91.9 bits (218), Expect = 2e-18
Identities = 43/80 (53%), Positives = 56/80 (70%)
Query: 44 TQFQRLKVEDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGH 103
+Q Q+L DAL YL VK KF + Y++FL++M++FKS IDT GVI RV LF GH
Sbjct: 18 SQNQKLTTNDALLYLKAVKDKFQDKRDKYDEFLEVMRDFKSGRIDTAGVIIRVKTLFNGH 77
Query: 104 PELIVGFNTFLPPGYKIEVQ 123
ELI+GFN FLP G+ I++Q
Sbjct: 78 HELILGFNAFLPKGFAIKLQ 97
Score = 63.7 bits (148), Expect = 7e-10
Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 12/86 (13%)
Query: 206 EFNHAIEYVNKIKSRFSRQPDKYKRFLEILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKL 265
+F AI +VNKIK+RF ++ YK FL IL+ Y+ ++ + Q+VY +VA L
Sbjct: 105 DFMEAINFVNKIKARFQQEDHVYKSFLGILNMYRLHNKSI----------QDVYGEVAAL 154
Query: 266 FEHQEDLLAEFGQFLPDAKAVTKPEP 291
F DLL EF FLPD T PEP
Sbjct: 155 FRDYPDLLEEFKHFLPDTS--TAPEP 178
Score = 44.0 bits (99), Expect = 6e-04
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 53 DALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIVGFNT 112
+A+++++++K +F + VY FL I+ ++ V V+ LF+ +P+L+ F
Sbjct: 108 EAINFVNKIKARFQQEDHVYKSFLGILNMYRLHNKSIQDVYGEVAALFRDYPDLLEEFKH 167
Query: 113 FLP 115
FLP
Sbjct: 168 FLP 170
Score = 37.9 bits (84), Expect = 0.042
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 208 NHAIEYVNKIKSRFSRQPDKYKRFLEILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKLFE 267
N A+ Y+ +K +F + DKY FLE++ ++ G D V +V LF
Sbjct: 26 NDALLYLKAVKDKFQDKRDKYDEFLEVMRDFKSGRID----------TAGVIIRVKTLFN 75
Query: 268 HQEDLLAEFGQFLPDAKAV 286
+L+ F FLP A+
Sbjct: 76 GHHELILGFNAFLPKGFAI 94
Score = 35.5 bits (78), Expect = 0.22
Identities = 18/68 (26%), Positives = 33/68 (48%)
Query: 62 KYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIVGFNTFLPPGYKIE 121
K K +P+ Y +FL + + + I + V+++ + +P+L+ GFN FL I+
Sbjct: 315 KVKEKLEPEAYQEFLKCLHIYSQEIITRSELKNLVNDILQHYPDLMNGFNDFLEQCENID 374
Query: 122 VQSNGQVS 129
G S
Sbjct: 375 AFLEGVFS 382
Score = 31.1 bits (67), Expect = 4.8
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 930 ESSAFEDAAREMLGIKAYPAYTLDKLV 956
+++ FED R ++G ++Y +TLDKL+
Sbjct: 1131 DNTKFEDDCRSIIGTQSYVLFTLDKLI 1157
>01_01_0066 -
513578-513730,513809-513920,514000-514163,514369-514521,
514598-514736,514823-514923,514995-515666,515953-516038,
516112-516777,516874-517128,517231-517358,518645-518799,
518880-519133,519186-519260,519324-519399,519511-519644,
519871-520153,520692-520850,520940-521038,521142-521310,
521423-521653,522002-522114,524179-524310,524389-524469,
525641-525763
Length = 1570
Score = 143 bits (347), Expect = 6e-34
Identities = 81/219 (36%), Positives = 116/219 (52%), Gaps = 7/219 (3%)
Query: 451 DIDLSTCKRLGTSYCALPREAAARKCSGRTPLCKEVLNDTWVSFPTWSEDSTFVTSRKTQ 510
++DLS C+R SY LP+ +T L VLND WVS + SED +F RK Q
Sbjct: 624 ELDLSNCQRCTPSYRLLPKHYPMPPAGNKTELGASVLNDHWVSVTSGSEDYSFKHMRKNQ 683
Query: 511 YEEYIYRCEDERFELDVVIET-NAATIRVLEGVQKKLSRMSGEDAARYRLDDCLGGHSPT 569
YEE ++RCED+RFELD+++E+ NAAT RV E ++K D+ R+D+ H
Sbjct: 684 YEESLFRCEDDRFELDMLLESVNAATKRVEELIEKMQDNSLKPDSP-IRIDE----HLTP 738
Query: 570 VHQRALRRIYGDKVAVDIIAGXXXXXXXXXXXXXXXXXXKEEEWREAQKGFNKQWREQNE 629
++ R + R+YGD +D++ K+EEW + FNK W E
Sbjct: 739 LNLRCIERLYGDH-GLDVMDVLRKNASVALPVILTRLKQKQEEWSRCRSDFNKVWAEIYA 797
Query: 630 KYYLKSLDHQGINFKQNDLKAMRSKTLFNEVESAYAARR 668
K Y KSLDH+ FKQ D K + +K+L E++ +R
Sbjct: 798 KNYHKSLDHRSFYFKQQDTKNLSTKSLLTEIKEINEKKR 836
Score = 97.5 bits (232), Expect = 5e-20
Identities = 45/80 (56%), Positives = 58/80 (72%)
Query: 44 TQFQRLKVEDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGH 103
T Q+L DAL YL VK KF + + Y +FL++M++FKS+ IDT GVI RV LF G+
Sbjct: 185 TAGQKLTTNDALVYLKAVKDKFQDKREKYEEFLEVMRDFKSERIDTNGVIIRVKTLFNGY 244
Query: 104 PELIVGFNTFLPPGYKIEVQ 123
PELI+GFNTFLP GY I++Q
Sbjct: 245 PELILGFNTFLPKGYAIKLQ 264
Score = 61.7 bits (143), Expect = 3e-09
Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 10/77 (12%)
Query: 206 EFNHAIEYVNKIKSRFSRQPDKYKRFLEILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKL 265
+F AI +VNKIK+RF YK FL+IL+ Y++ ++ + Q+VY +VA L
Sbjct: 271 DFVEAINFVNKIKNRFQHDEHVYKAFLDILNMYRKDNKSI----------QDVYHEVAVL 320
Query: 266 FEHQEDLLAEFGQFLPD 282
F +DLL EF FLPD
Sbjct: 321 FADHKDLLEEFQHFLPD 337
Score = 47.6 bits (108), Expect = 5e-05
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 320 GATVRDVSYSEAAKLATIHDYSFFERARKALRSQQVYDNFLRCLLLFTNEIISSSELLSV 379
GA+ +A K ++ F E+ ++ L Y FL+CL +++ EII+ SEL ++
Sbjct: 450 GASASLYDNKDALKSVYTQEFHFCEKVKEKLE-HDAYQEFLKCLHIYSQEIITRSELKNL 508
Query: 380 TSPFLCRHPELQRWLHDFV 398
+ L +HP+L ++F+
Sbjct: 509 VNDILQQHPDLMDGFNEFL 527
Score = 43.2 bits (97), Expect = 0.001
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 53 DALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIVGFNT 112
+A+++++++K +F VY FLDI+ ++ V V+ LF H +L+ F
Sbjct: 274 EAINFVNKIKNRFQHDEHVYKAFLDILNMYRKDNKSIQDVYHEVAVLFADHKDLLEEFQH 333
Query: 113 FLP 115
FLP
Sbjct: 334 FLP 336
Score = 36.7 bits (81), Expect = 0.097
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Query: 208 NHAIEYVNKIKSRFSRQPDKYKRFLEILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKLFE 267
N A+ Y+ +K +F + +KY+ FLE++ RD K +++ V +V LF
Sbjct: 193 NDALVYLKAVKDKFQDKREKYEEFLEVM-------RDFK---SERIDTNGVIIRVKTLFN 242
Query: 268 HQEDLLAEFGQFLPDAKAVTKPEPAHEHHPMTF 300
+L+ F FLP A+ E E P+ F
Sbjct: 243 GYPELILGFNTFLPKGYAIKLQE---EKKPVDF 272
Score = 35.5 bits (78), Expect = 0.22
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 62 KYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIVGFNTFLPPGYKIE 121
K K + Y +FL + + + I + V+++ + HP+L+ GFN FL I+
Sbjct: 475 KVKEKLEHDAYQEFLKCLHIYSQEIITRSELKNLVNDILQQHPDLMDGFNEFLEHCENID 534
Query: 122 -VQSNGQVSVSMPS 134
+ S+ + S+S+P+
Sbjct: 535 FMVSSPKHSLSLPA 548
Score = 33.1 bits (72), Expect = 1.2
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 908 SSPTEYYXXXXXXXXXXXXXXMESSAFEDAAREMLGIKAYPAYTLDKLV 956
++P + Y +++ FED R ++G ++Y +TLDKL+
Sbjct: 1323 TNPPDLYAKFISALYNLLDGSSDNTKFEDDCRSIIGTQSYVLFTLDKLI 1371
>05_07_0305 -
29097478-29097598,29097766-29097866,29098136-29098288,
29098404-29098542,29098649-29098719,29099022-29099333,
29099605-29099903,29100011-29100271,29100365-29100471,
29100588-29100739,29100816-29100970,29102946-29103141,
29103340-29103468,29103540-29103641,29103736-29103889,
29103970-29104058
Length = 846
Score = 93.1 bits (221), Expect = 1e-18
Identities = 57/217 (26%), Positives = 103/217 (47%), Gaps = 15/217 (6%)
Query: 445 QGDMAMDIDLSTCKRLGTSYCALPREAAARKCSGRTPLCKEVLNDTWVSFPTWSEDSTFV 504
+ ++ + +D S CK SYC LP+ + S +T L + +LND+ VS + ED +
Sbjct: 250 ENELPLKVDPSNCKHCTPSYCLLPKNCVTLQSSYQTELGRSILNDSLVSVTSGRED-CYK 308
Query: 505 TSRKTQYEEYIYRCEDERFELDVVIETNAATIRVLEGVQKKLSRMSGEDAARYRLDDCLG 564
K QYEE +++CED+ FE D++++ AT +E +Q + + ++ +
Sbjct: 309 FRTKNQYEENMFKCEDDLFESDMLLQRFRATADFIEDLQYRF-------GSNVKIQE--- 358
Query: 565 GHSPTVHQRALRRIYGDKVAVDIIAGXXXXXXXXXXXXXXXXXXKEE--EWREAQKGFNK 622
H +H+R + ++Y D +D++ ++ ++ EA+ NK
Sbjct: 359 -HLTPLHKRCIEQLYDDS-GIDMLDALSESENTSSALAVILSRLNQKIGDFSEARLSLNK 416
Query: 623 QWREQNEKYYLKSLDHQGINFKQNDLKAMRSKTLFNE 659
+ Y +SLDH +FKQ D++ M K L E
Sbjct: 417 MCPDTVANNYYRSLDHCSPSFKQLDMERMSPKALLAE 453
>08_02_0284 -
15305062-15305170,15305299-15305460,15306348-15306485,
15306741-15306754
Length = 140
Score = 62.5 bits (145), Expect = 2e-09
Identities = 29/70 (41%), Positives = 44/70 (62%)
Query: 48 RLKVEDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELI 107
+L EDA++Y+ +K KF P+ ++ F+ M +F I+T VI RV LF G+P+L+
Sbjct: 67 KLTTEDAMNYILTIKNKFLRHPEKFHAFIHTMIDFSRGRINTHTVIERVKILFDGYPDLL 126
Query: 108 VGFNTFLPPG 117
+ FN FLP G
Sbjct: 127 LAFNKFLPRG 136
Score = 36.3 bits (80), Expect = 0.13
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Query: 210 AIEYVNKIKSRFSRQPDKYKRFLEILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKLFEHQ 269
A+ Y+ IK++F R P+K+ F+ + + RG + V +V LF+
Sbjct: 73 AMNYILTIKNKFLRHPEKFHAFIHTMIDFSRG----------RINTHTVIERVKILFDGY 122
Query: 270 EDLLAEFGQFLP 281
DLL F +FLP
Sbjct: 123 PDLLLAFNKFLP 134
>02_05_0063 - 25523140-25524405
Length = 421
Score = 50.4 bits (115), Expect = 7e-06
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 54 ALSYLDQVKYKFNTQPQVYNDFLDIMKEF-KSQTIDTPGVITRVSNLFKGHPELIVGFNT 112
AL++L +V+ +F +P VY I+ E+ K T V+ + L HP+LI FNT
Sbjct: 17 ALAFLRKVRSRFWLKPCVYKGLETILTEYGKYANASTSLVVDGAAVLLGDHPDLIAEFNT 76
Query: 113 FLPPGYKIEVQSNGQVSVSMPSPTAIG 139
F+ P YKIE+ ++ + + P G
Sbjct: 77 FVRPEYKIELPADHLPAAATAKPQGKG 103
>11_04_0011 -
12147113-12147278,12148216-12149145,12149463-12149834,
12149884-12150007,12150343-12150391
Length = 546
Score = 33.1 bits (72), Expect = 1.2
Identities = 17/66 (25%), Positives = 28/66 (42%)
Query: 233 EILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKLFEHQEDLLAEFGQFLPDAKAVTKPEPA 292
E+LH K P Q+ E+E F+ +EDLL ++G L + P
Sbjct: 97 ELLHVDSEPDSSAKSPSQLQELEEEEIHPTENPFQFEEDLLEDYGNTLNYSCEKRPPTKV 156
Query: 293 HEHHPM 298
+ + P+
Sbjct: 157 NSNDPL 162
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,472,534
Number of Sequences: 37544
Number of extensions: 912225
Number of successful extensions: 2085
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2050
Number of HSP's gapped (non-prelim): 28
length of query: 1039
length of database: 14,793,348
effective HSP length: 89
effective length of query: 950
effective length of database: 11,451,932
effective search space: 10879335400
effective search space used: 10879335400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 65 (30.3 bits)
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