Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000204-TA|BGIBMGA000204-PA|IPR003822|Paired amphipathic
helix, IPR013194|Histone deacetylase interacting
(1039 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59386| Best HMM Match : No HMM Matches (HMM E-Value=.) 262 8e-70
SB_57295| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.014
SB_20190| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 2.1
SB_56909| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 6.4
SB_30861| Best HMM Match : Peptidase_A17 (HMM E-Value=2.1e-40) 31 6.4
SB_1216| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 6.4
SB_49721| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 6.4
SB_5393| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 31 6.4
SB_25615| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-10) 30 8.4
>SB_59386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1037
Score = 262 bits (643), Expect = 8e-70
Identities = 132/257 (51%), Positives = 179/257 (69%), Gaps = 29/257 (11%)
Query: 323 VRDVSYSEAAKLATIHDYSFFERARKALRSQQVYDNFLRCLLLFTNEIISSSELLSVTSP 382
+++VS +EA KL T +Y+FF++ RKAL+S +VYDNFLRCL+LF E+IS SEL+ + S
Sbjct: 311 MKEVSMAEAGKLGTFTEYAFFDKVRKALKSPEVYDNFLRCLVLFNQEVISRSELVQLASN 370
Query: 383 FLCRHPELQRWLHDFVGXXXXXXXXXXXXXXGYPWTNPIPVEPRPRYESVGALGAQMRND 442
FL + P+L W +F+G Y ++P+ ES+ +
Sbjct: 371 FLGKFPDLLTWFKEFLG---------------YKDSSPM--------ESMSGF-----KE 402
Query: 443 RPQGDMA-MDIDLSTCKRLGTSYCALPREAAARKCSGRTPLCKEVLNDTWVSFPTWSEDS 501
R G++A ++ID ++CKR GTSY ALP+ KCSGR+ +CKEVLNDTWVSFP+WSED+
Sbjct: 403 RTSGELAHLEIDYASCKRYGTSYRALPKSYTQPKCSGRSDMCKEVLNDTWVSFPSWSEDT 462
Query: 502 TFVTSRKTQYEEYIYRCEDERFELDVVIETNAATIRVLEGVQKKLSRMSGEDAARYRLDD 561
F +RKTQYEEYI+RCEDERFELDVV+E+N +TIRVLE VQKKL RMS E+ ++RLD
Sbjct: 463 PFPGTRKTQYEEYIFRCEDERFELDVVLESNLSTIRVLEAVQKKLQRMSSEEQQKFRLDS 522
Query: 562 CLGGHSPTVHQRALRRI 578
CLGG S VH++A++R+
Sbjct: 523 CLGGTSEIVHKKAIQRL 539
Score = 138 bits (335), Expect = 2e-32
Identities = 74/144 (51%), Positives = 88/144 (61%), Gaps = 18/144 (12%)
Query: 609 KEEEWREAQKGFNKQWREQNEKYYLKSLDHQGINFKQNDLKAMRSKTLFNEVESAYAARR 668
KEEEWRE+Q+ FNK WR+QNEKYYLKSLDHQGI FKQNDLKAMRSK+L NE+ES +
Sbjct: 542 KEEEWRESQRQFNKIWRDQNEKYYLKSLDHQGITFKQNDLKAMRSKSLMNEIESIF---- 597
Query: 669 PGPHLVVDYNMQSRQEAIKIVRDTAELLIHHARRQTAIQKAEKRRIKQLLRHFLPDLFSH 728
E I+ D A L++HH +RQT+I K +K +IK LL F+PDLF
Sbjct: 598 --------------DEDKSILDDAAGLIVHHMKRQTSIHKEDKAKIKLLLHCFVPDLFFA 643
Query: 729 PRQPLSXXXXXXXXXXXAPSPECP 752
PR LS PE P
Sbjct: 644 PRGELSDDEDSVKEMNGISKPEMP 667
Score = 93.5 bits (222), Expect = 8e-19
Identities = 43/70 (61%), Positives = 54/70 (77%)
Query: 82 FKSQTIDTPGVITRVSNLFKGHPELIVGFNTFLPPGYKIEVQSNGQVSVSMPSPTAIGSG 141
FK +IDTPGVI+RVS+LFKGHPELIVGFNTFLPPGYKIEV ++ SVS+ +PT +
Sbjct: 77 FKGLSIDTPGVISRVSSLFKGHPELIVGFNTFLPPGYKIEVHAHDPGSVSVTAPTGHHTQ 136
Query: 142 VLLGVHHTQQ 151
+ ++H Q
Sbjct: 137 ICTSLNHPPQ 146
Score = 81.0 bits (191), Expect = 5e-15
Identities = 38/67 (56%), Positives = 50/67 (74%), Gaps = 1/67 (1%)
Query: 218 KSRFSRQPDKYKRFLEILHAYQRGHRDLKEPQAKQ-QTEQEVYSQVAKLFEHQEDLLAEF 276
++RF QP+ YK FLEILH YQ+ +++KE ++ + EVY QVAKLF++QEDLL EF
Sbjct: 169 QNRFQGQPEIYKAFLEILHTYQKEQKNIKEIYLREAKLANEVYKQVAKLFQNQEDLLKEF 228
Query: 277 GQFLPDA 283
QFLPDA
Sbjct: 229 SQFLPDA 235
Score = 42.7 bits (96), Expect = 0.001
Identities = 20/45 (44%), Positives = 25/45 (55%)
Query: 912 EYYXXXXXXXXXXXXXXMESSAFEDAAREMLGIKAYPAYTLDKLV 956
EYY M+S+ FED REM G+ AY A+T+DKLV
Sbjct: 722 EYYPAFLDMVRNLLDGNMDSTNFEDTCREMFGVHAYIAFTMDKLV 766
Score = 35.5 bits (78), Expect = 0.22
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 56 SYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIVGFNTFLP 115
++ D+V+ K P+VY++FL + F + I ++ SN P+L+ F FL
Sbjct: 329 AFFDKVR-KALKSPEVYDNFLRCLVLFNQEVISRSELVQLASNFLGKFPDLLTWFKEFL- 386
Query: 116 PGYK 119
GYK
Sbjct: 387 -GYK 389
>SB_57295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1320
Score = 39.5 bits (88), Expect = 0.014
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 614 REAQKGFNKQWREQNEKYYLKSLDHQGINFKQNDLKAMRSKTLFNEVESAYAARRPGPHL 673
+ A G ++ ++++ E + K L HQG+ + LK RS N +ES + R PHL
Sbjct: 589 KNANIGGSESFKKKREFFNEKLLSHQGMKGGEVRLKINRS----NLLESVHPNPRRPPHL 644
Query: 674 VVDYNMQSRQEAIKIVRDTAELLIHHARRQTAIQKAEKRRIKQLL 718
+ Y + Q K + ++A I +ARRQ K + + QLL
Sbjct: 645 NLKYYKFAGQVVSKCIYESA---ISNARRQNVKAKFTRSFLAQLL 686
>SB_20190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 541
Score = 32.3 bits (70), Expect = 2.1
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 816 KRLSNDDQILKSDLKTEPFEVEDDLRDHPPNEGRFVCTSSWY-LFLRVH 863
K+ S+++ +K LK + ++ R HPPN+ R C S WY + R+H
Sbjct: 81 KQKSSNEMKVKQLLKKKT-KIPYPFRVHPPNQFRETCGSGWYEKYARLH 128
>SB_56909| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1379
Score = 30.7 bits (66), Expect = 6.4
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 208 NHAIEYVNKIKSRFSRQPDKYKRFLEILHAY-QRGHRDLKEPQAKQQT 254
N A + +N +K +FSR+P +++ + Y +GH P+ Q+T
Sbjct: 294 NEADKRLNSLKRKFSREPGLEEKYRAAMEKYITKGHARKLSPEEAQET 341
>SB_30861| Best HMM Match : Peptidase_A17 (HMM E-Value=2.1e-40)
Length = 1740
Score = 30.7 bits (66), Expect = 6.4
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 208 NHAIEYVNKIKSRFSRQPDKYKRFLEILHAY-QRGHRDLKEPQAKQQT 254
N A + +N +K +FSR+P +++ + Y +GH P+ Q+T
Sbjct: 812 NEADKRLNSLKRKFSREPGLEEKYRAAMEKYITKGHARKLSPEEAQET 859
>SB_1216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1834
Score = 30.7 bits (66), Expect = 6.4
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 208 NHAIEYVNKIKSRFSRQPDKYKRFLEILHAY-QRGHRDLKEPQAKQQT 254
N A + +N +K +FSR+P +++ + Y +GH P+ Q+T
Sbjct: 877 NEADKRLNSLKRKFSREPGLEEKYRAAMEKYITKGHARKLSPEEAQET 924
>SB_49721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 30.7 bits (66), Expect = 6.4
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 208 NHAIEYVNKIKSRFSRQPDKYKRFLEILHAY-QRGHRDLKEPQAKQQT 254
N A + +N +K +FSR+P +++ + Y +GH P+ Q+T
Sbjct: 203 NEADKRLNSLKRKFSREPGLEEKYRAAMEKYITKGHARKLSPEEAQET 250
>SB_5393| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 1244
Score = 30.7 bits (66), Expect = 6.4
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 208 NHAIEYVNKIKSRFSRQPDKYKRFLEILHAY-QRGHRDLKEPQAKQQT 254
N A + +N +K +FSR+P +++ + Y +GH P+ Q+T
Sbjct: 611 NEADKRLNSLKRKFSREPGLEEKYRAAMEKYITKGHARKLSPEEAQET 658
>SB_25615| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-10)
Length = 475
Score = 30.3 bits (65), Expect = 8.4
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 208 NHAIEYVNKIKSRFSRQPDKYKRFLEILHAY-QRGHRDLKEPQAKQQT 254
N A + +N +K +FSR+P +++ + Y +GH P+ Q+T
Sbjct: 95 NEADKRLNSLKRKFSREPGFEEKYRAAMEKYITKGHARKLSPEEAQET 142
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,004,348
Number of Sequences: 59808
Number of extensions: 1016300
Number of successful extensions: 2611
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2596
Number of HSP's gapped (non-prelim): 22
length of query: 1039
length of database: 16,821,457
effective HSP length: 89
effective length of query: 950
effective length of database: 11,498,545
effective search space: 10923617750
effective search space used: 10923617750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 65 (30.3 bits)
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