GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000204-TA|BGIBMGA000204-PA|IPR003822|Paired amphipathic
helix, IPR013194|Histone deacetylase interacting
         (1039 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    27   2.5  
AY724802-1|AAW50311.1|  134|Anopheles gambiae G protein alpha su...    26   5.9  
AY724801-1|AAW50310.1|  134|Anopheles gambiae G protein alpha su...    26   5.9  

>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 124 SNGQVSVSMP-SPTAIGSGVLLGVHHTQQPQLVHLLPVPHAEECRPVGPALQHLSHAAPD 182
           ++G +++S   SP A+ S    G HH   P   H L  PH      +  +    +H +P 
Sbjct: 688 AHGSLNLSAGGSPVAVVSSSPTGGHHLASPSPHHHLTSPHGAPL-ALTSSKSASTHPSPH 746

Query: 183 PA 184
           PA
Sbjct: 747 PA 748


>AY724802-1|AAW50311.1|  134|Anopheles gambiae G protein alpha
           subunit AgOn protein.
          Length = 134

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/52 (26%), Positives = 22/52 (42%)

Query: 643 FKQNDLKAMRSKTLFNEVESAYAARRPGPHLVVDYNMQSRQEAIKIVRDTAE 694
           F   D K  R     N ++S  A  R  P+L + +    R+   K+V D  +
Sbjct: 48  FTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSIAFGNNERECDAKMVFDVVQ 99


>AY724801-1|AAW50310.1|  134|Anopheles gambiae G protein alpha
           subunit AgOa protein.
          Length = 134

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/52 (26%), Positives = 22/52 (42%)

Query: 643 FKQNDLKAMRSKTLFNEVESAYAARRPGPHLVVDYNMQSRQEAIKIVRDTAE 694
           F   D K  R     N ++S  A  R  P+L + +    R+   K+V D  +
Sbjct: 48  FTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSIAFGNNERECDAKMVFDVVQ 99


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.318    0.134    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 871,346
Number of Sequences: 2123
Number of extensions: 32683
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 68
Number of HSP's gapped (non-prelim): 3
length of query: 1039
length of database: 516,269
effective HSP length: 71
effective length of query: 968
effective length of database: 365,536
effective search space: 353838848
effective search space used: 353838848
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)