GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000204-TA|BGIBMGA000204-PA|IPR003822|Paired amphipathic
helix, IPR013194|Histone deacetylase interacting
         (1039 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81494-5|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical pr...   116   7e-26
AF099925-12|AAC69509.1|  257|Caenorhabditis elegans Hypothetical...    31   4.2  
Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p...    31   5.6  
AF043701-2|ABP57820.1|  167|Caenorhabditis elegans Hypothetical ...    30   9.8  

>Z81494-5|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical protein
            F02E9.4 protein.
          Length = 1505

 Score =  116 bits (280), Expect = 7e-26
 Identities = 82/291 (28%), Positives = 131/291 (45%), Gaps = 18/291 (6%)

Query: 442  DRPQGDMAMDIDLSTCKRLGTSYCALPREAAARKCSGRTPL---CKEVLNDTWVSFPTWS 498
            D+       +++ +T   LG SY  + ++  A  CSGR  L    K VLNDTW S P+WS
Sbjct: 783  DQKMLQQVKNVEAATVCTLGPSYRFM-KDTKATDCSGRVELDDDLKGVLNDTWTSIPSWS 841

Query: 499  -EDSTFVTSRKTQYEEYIYRCEDERFELDVVIETNAATIRVLEGVQKKLSRMSGEDAARY 557
             ED+     +K+  EE+ ++ EDER+ELD+++++N   I  L    +    MS ED   +
Sbjct: 842  SEDTGSQAIKKSNLEEFHFKTEDERYELDIIVDSNRTVIEQLSKTLRDYEAMSDEDKKSF 901

Query: 558  RLDDCLGGHSPTVHQRALRRIYGDKVAVDIIAGXXXXXXXXXXXXXXXXXXKEEEWREAQ 617
            +LD  L   S +   R L +++ +  A D I                    K+  W   Q
Sbjct: 902  KLDKWLNASSRSTTIRVLAKVFTNS-AQDFIDAAQKNPLVGLRRILESLKEKDLLWSRFQ 960

Query: 618  KGFNKQWREQNEKYYLKSLDHQGINFKQNDLKAMRSKTLFNEVESAYAARR------PGP 671
            +  N+ WR+  +K    +        K  D KA +SK L N++E     RR        P
Sbjct: 961  QDTNRTWRDALDKQMSAATTILNNQHKNYDQKAFKSKPLVNQIEQICEERRKNNSTDTSP 1020

Query: 672  HLVVDYNMQSRQEAIKIVRDTAELLIHHARRQTAIQKAEKRRIKQLLRHFL 722
            HL+++Y  +      K+ RD  ++  H     +   K ++ R K +L   L
Sbjct: 1021 HLILEYTPER-----KVYRDVNDVTGHFFHDLSG-TKCDRDRTKIVLFRIL 1065



 Score = 84.2 bits (199), Expect = 4e-16
 Identities = 38/84 (45%), Positives = 59/84 (70%)

Query: 50  KVEDALSYLDQVKYKFNTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELIVG 109
           +V++AL+YL  +K  F++   VY+ FL+IMK+F++Q I+TP VI +V+ L    PEL++G
Sbjct: 285 RVDEALAYLRVIKSTFSSDVPVYHRFLEIMKDFRAQRIETPDVIEQVAELLYDSPELVLG 344

Query: 110 FNTFLPPGYKIEVQSNGQVSVSMP 133
           FNTFLP GY+I +  + +   S P
Sbjct: 345 FNTFLPTGYRITLTPDRKYVFSSP 368



 Score = 37.9 bits (84), Expect = 0.037
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 10/80 (12%)

Query: 208 NHAIEYVNKIKSRFSRQPDKYKRFLEILHAYQRGHRDLKEPQAKQQTEQEVYSQVAKLFE 267
           + A+ Y+  IKS FS     Y RFLEI          +K+ +A++    +V  QVA+L  
Sbjct: 287 DEALAYLRVIKSTFSSDVPVYHRFLEI----------MKDFRAQRIETPDVIEQVAELLY 336

Query: 268 HQEDLLAEFGQFLPDAKAVT 287
              +L+  F  FLP    +T
Sbjct: 337 DSPELVLGFNTFLPTGYRIT 356


>AF099925-12|AAC69509.1|  257|Caenorhabditis elegans Hypothetical
           protein K01A2.10 protein.
          Length = 257

 Score = 31.1 bits (67), Expect = 4.2
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 609 KEEEWREAQKGFNKQWREQNEKYYLKSLDHQGINFKQNDLKAMRSKTLFNEVESA 663
           ++ EWR+ +K    Q+ +      LKSL H  IN   N+L+  + KTL  + +SA
Sbjct: 63  RDAEWRKHEKS-QIQFLQNETSNMLKSL-HNEINRLGNELREEKRKTLHGDDDSA 115


>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
            protein T20D3.11 protein.
          Length = 1843

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 93   ITRVSNLFKGHPEL-IVGFNTFLPPGYKIEVQSNGQVSVSMPSPTAIGSGVLLGVHHTQQ 151
            I   +  + G P L +VGF     P +  +V   G ++V +     +G G++ G+  T  
Sbjct: 1722 IKTANTTYSGRPYLQVVGFIDRAFPSFLAKVFKGGVIAVYLSVILVVGRGLVRGI-FTTS 1780

Query: 152  PQLVHLLPVPHAE 164
            P  V    +P+A+
Sbjct: 1781 PSTVMFTELPNAD 1793


>AF043701-2|ABP57820.1|  167|Caenorhabditis elegans Hypothetical
           protein K12C11.5 protein.
          Length = 167

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 46  FQRLKVEDALSYLDQVKYKF-NTQPQVYNDFLDIMKEFKSQTIDTPGVITRVSN 98
           F+  +VED +  L     KF  T+  ++ DF D     +S+ ID P  +  VSN
Sbjct: 111 FEISEVEDYVDDLYLQLSKFCKTKNSIFIDFSDFFSGSRSRPIDPPNFLNEVSN 164


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.134    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,773,384
Number of Sequences: 27539
Number of extensions: 782852
Number of successful extensions: 2145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2136
Number of HSP's gapped (non-prelim): 9
length of query: 1039
length of database: 12,573,161
effective HSP length: 89
effective length of query: 950
effective length of database: 10,122,190
effective search space: 9616080500
effective search space used: 9616080500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)