Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000203-TA|BGIBMGA000203-PA|undefined
         (158 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   0.70 
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    21   3.7  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    21   3.7  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    21   6.5  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    20   8.6  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 0.70
 Identities = 11/37 (29%), Positives = 20/37 (54%)

Query: 58  KPPELSPEEQQKRQEKVESIKKMLTSTSADQSKSPQP 94
           K PE   +E +  +EK  +  K+  S+S  + + P+P
Sbjct: 75  KKPENVKKEDESDEEKPTTSFKLKDSSSDSEDERPRP 111


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 73  KVESIKKMLTSTSADQSKSPQPEEKRRREHLLQMNQIL 110
           + + +K   + TSA+  + P PE   R ++  Q  + L
Sbjct: 19  RAKIVKVAASPTSANPDEEPDPELLDRYDNFYQTTKSL 56


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 73  KVESIKKMLTSTSADQSKSPQPEEKRRREHLLQMNQIL 110
           + + +K   + TSA+  + P PE   R ++  Q  + L
Sbjct: 19  RAKIVKVAASPTSANPDEEPDPELLDRYDNFYQTTKSL 56


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
          protein.
          Length = 203

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 51 PERYIPEKPPELSPEEQQKRQEKVESIKKMLTSTS-ADQSKSPQP 94
          PE Y P  PP   P  Q       +S    ++S S   + KS +P
Sbjct: 26 PEPYPPRCPPIYEPSCQYSPVSNSDSENSEVSSNSYTPKIKSCRP 70


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
          castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 59 PPELSPEEQQKRQEKVESIKKMLTSTSADQSKSP 92
          PPE +P   +  +  + +I ++  ST     KSP
Sbjct: 34 PPEDTPLSFKNIESHLNAISQITNSTLDPGRKSP 67


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.311    0.127    0.348 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,754
Number of Sequences: 317
Number of extensions: 1393
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 158
length of database: 114,650
effective HSP length: 52
effective length of query: 106
effective length of database: 98,166
effective search space: 10405596
effective search space used: 10405596
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (20.9 bits)
S2: 40 (20.2 bits)