GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000203-TA|BGIBMGA000203-PA|undefined
         (158 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             28   0.051
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   1.9  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      21   4.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   5.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   5.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 27.9 bits (59), Expect = 0.051
 Identities = 14/70 (20%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 39   DQLLAAPQKIVIPERYIPEKPPELSPEEQQKRQEKVESIKKMLTSTSADQSKSPQPEEKR 98
            D+  A   K+++   +  +K  +  P++QQ++Q++ +  ++    +   Q + PQP++++
Sbjct: 1482 DKKSACDSKLIVD--HSSQKTQQQQPQQQQQQQQQQQPQQQ----SQQPQQQQPQPQQQQ 1535

Query: 99   RREHLLQMNQ 108
            +++   Q  Q
Sbjct: 1536 QQQQQQQPQQ 1545



 Score = 22.2 bits (45), Expect = 2.5
 Identities = 15/79 (18%), Positives = 36/79 (45%), Gaps = 2/79 (2%)

Query: 19  PDVVRSALPP-RDLRRADNTIDQLLAAPQKIVIPERYIPEKPPELSPEEQQKRQEKVESI 77
           P+V+R  +   + L ++ N  DQ     Q++   +   P+   +  P++QQ++Q++    
Sbjct: 785 PEVMRRLMSEDKRLSKSVNG-DQSQPPHQQLHHHQSTHPQAQAQAQPQQQQQQQQQQPQQ 843

Query: 78  KKMLTSTSADQSKSPQPEE 96
           ++        Q + P   +
Sbjct: 844 QQQQQQQQQQQQRGPMTND 862


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 10/26 (38%), Positives = 21/26 (80%), Gaps = 1/26 (3%)

Query: 63   SPEEQQKRQEKVESIKKMLTSTSADQ 88
            SP +QQ++Q++ + + K+LTS+++ Q
Sbjct: 1101 SPHQQQQQQQQ-KILAKVLTSSNSGQ 1125



 Score = 22.2 bits (45), Expect = 2.5
 Identities = 11/63 (17%), Positives = 29/63 (46%)

Query: 58  KPPELSPEEQQKRQEKVESIKKMLTSTSADQSKSPQPEEKRRREHLLQMNQILAKQVTEM 117
           KP  ++ E+     ++    K+  T+T+     S + E+K+  E  +  + +  +Q   +
Sbjct: 773 KPANVNKEQSPNSTKETTPKKERKTATTTQPVISSRKEQKKSEEKNINDHCVTTEQSVVV 832

Query: 118 SKI 120
           + +
Sbjct: 833 TNV 835



 Score = 20.6 bits (41), Expect = 7.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 59  PPELSPEEQQKRQEKVESIKKM 80
           PPE   EE+  ++  ++SI  M
Sbjct: 317 PPETEEEEENDKKLDLDSIDMM 338


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 9/28 (32%), Positives = 18/28 (64%)

Query: 67  QQKRQEKVESIKKMLTSTSADQSKSPQP 94
           ++K ++K    KK+++S S  ++ SP P
Sbjct: 335 KKKSKKKESDDKKVISSKSGSKANSPFP 362


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 13/44 (29%), Positives = 17/44 (38%)

Query: 21 VVRSALPPRDLRRADNTIDQLLAAPQKIVIPERYIPEKPPELSP 64
          VV   + P       N +  L A    +V   RYI + PP   P
Sbjct: 20 VVILLIIPSKCEAVSNDMQPLEARSADLVPEPRYIIDVPPRCPP 63


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 11/45 (24%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 103 LLQMNQILAKQVTEMSKIIAVKAWEELPLNQSDHEAED-RSPDVE 146
           +L ++ I  + +T ++ I   ++W +  L   ++ +ED R  DV+
Sbjct: 38  VLSIDSINEESMTYVADIFLAQSWRDSRLRLPENMSEDYRILDVD 82


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 8/44 (18%), Positives = 24/44 (54%)

Query: 65  EEQQKRQEKVESIKKMLTSTSADQSKSPQPEEKRRREHLLQMNQ 108
           E+QQ+ Q + +  ++   +     ++ PQ +++++++   Q  Q
Sbjct: 413 EQQQQMQAQQQHQQQQQQTQHVINAQQPQQQQQQQQQQQQQQQQ 456


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.127    0.348 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,315
Number of Sequences: 429
Number of extensions: 1679
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 158
length of database: 140,377
effective HSP length: 53
effective length of query: 105
effective length of database: 117,640
effective search space: 12352200
effective search space used: 12352200
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.4 bits)
S2: 41 (20.6 bits)