Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000202-TA|BGIBMGA000202-PA|undefined
         (136 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR533448-1|CAG38479.1|  119|Homo sapiens NDUFC2 protein.               29   4.0  
BC007323-1|AAH07323.1|  119|Homo sapiens NADH dehydrogenase (ubi...    29   4.0  
AF369951-1|AAM21294.1|  119|Homo sapiens lung cancer oncogene 1 ...    29   4.0  
AF087899-1|AAP97198.1|  119|Homo sapiens NADH dehydrogenase prot...    29   4.0  
AF087659-1|AAD09754.1|  119|Homo sapiens NADH-ubiquinone oxidore...    29   4.0  

>CR533448-1|CAG38479.1|  119|Homo sapiens NDUFC2 protein.
          Length = 119

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 30  AVKDRENLWGFLKKISLDVPDEDKEFYSALPGQLSP 65
           AV+DRE ++G++K    D P+EDK+ Y  +  +  P
Sbjct: 83  AVRDRE-MFGYMKLHPEDFPEEDKKTYGEIFEKFHP 117


>BC007323-1|AAH07323.1|  119|Homo sapiens NADH dehydrogenase
           (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa protein.
          Length = 119

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 30  AVKDRENLWGFLKKISLDVPDEDKEFYSALPGQLSP 65
           AV+DRE ++G++K    D P+EDK+ Y  +  +  P
Sbjct: 83  AVRDRE-MFGYMKLHPEDFPEEDKKTYGEIFEKFHP 117


>AF369951-1|AAM21294.1|  119|Homo sapiens lung cancer oncogene 1
           protein.
          Length = 119

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 30  AVKDRENLWGFLKKISLDVPDEDKEFYSALPGQLSP 65
           AV+DRE ++G++K    D P+EDK+ Y  +  +  P
Sbjct: 83  AVRDRE-MFGYMKLHPEDFPEEDKKTYGEIFEKFHP 117


>AF087899-1|AAP97198.1|  119|Homo sapiens NADH dehydrogenase
           protein.
          Length = 119

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 30  AVKDRENLWGFLKKISLDVPDEDKEFYSALPGQLSP 65
           AV+DRE ++G++K    D P+EDK+ Y  +  +  P
Sbjct: 83  AVRDRE-MFGYMKLHPEDFPEEDKKTYGEIFEKFHP 117


>AF087659-1|AAD09754.1|  119|Homo sapiens NADH-ubiquinone
           oxidoreductase B14.5B subunit protein.
          Length = 119

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 30  AVKDRENLWGFLKKISLDVPDEDKEFYSALPGQLSP 65
           AV+DRE ++G++K    D P+EDK+ Y  +  +  P
Sbjct: 83  AVRDRE-MFGYMKLHPEDFPEEDKKTYGEIFEKFHP 117


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.320    0.140    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,594,959
Number of Sequences: 224733
Number of extensions: 501521
Number of successful extensions: 791
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 791
Number of HSP's gapped (non-prelim): 5
length of query: 136
length of database: 73,234,838
effective HSP length: 82
effective length of query: 54
effective length of database: 54,806,732
effective search space: 2959563528
effective search space used: 2959563528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)