Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000202-TA|BGIBMGA000202-PA|undefined
         (136 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g01340.1 68415.m00051 expressed protein                             28   1.9  
At5g42760.1 68418.m05207 O-methyltransferase N-terminus domain-c...    27   4.4  
At2g44220.1 68415.m05503 expressed protein  and genefinder conta...    27   4.4  
At5g27660.1 68418.m03315 DegP protease, putative similar to Seri...    27   5.9  
At1g19830.1 68414.m02485 auxin-responsive protein, putative simi...    26   7.7  

>At2g01340.1 68415.m00051 expressed protein 
          Length = 215

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 97  AEETREKKSLYFINHGVGSCPENTV--AIHGLCVERIEEL 134
           A++  E K LYF+   V  CP   V   IH    ER+E L
Sbjct: 59  AKQRLEAKRLYFVVEPVKECPPRRVRSGIHVSAKERLESL 98


>At5g42760.1 68418.m05207 O-methyltransferase N-terminus
           domain-containing protein contains Pfam profile PF02409:
           O-methyltransferase N-terminus
          Length = 344

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 40  FLKKISLDVPDEDKEFYSALPGQLSPTL 67
           F+ K S  +P+    FYS  P QL PTL
Sbjct: 250 FMNKPSATLPNSVFHFYSDWPDQLLPTL 277


>At2g44220.1 68415.m05503 expressed protein  and genefinder contains
           Pfam profile PF03080: Arabidopsis proteins of unknown
           function
          Length = 393

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 101 REKKSLYFINHGVGSCPENTVAI 123
           RE K++  + H  G CP+NTV I
Sbjct: 86  REAKAVTQVWHKAGECPKNTVPI 108


>At5g27660.1 68418.m03315 DegP protease, putative similar to
          Serine protease HTRA2, mitochondrial precursor (High
          temperature requirement protein A2) (HtrA2) (Omi
          stress-regulated endoprotease) (Serine proteinase OMI)
          (SP:O43464) {Homo sapiens}
          Length = 459

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 43 KISLDVPDEDKEFYSALPGQLSPTL 67
          ++SL +P+  +E  S LP Q+SP L
Sbjct: 72 RVSLAIPESVRESLSLLPWQISPGL 96


>At1g19830.1 68414.m02485 auxin-responsive protein, putative similar
           to auxin-induced protein TGSAUR21 (GI:10185818) [Tulipa
           gesneriana]
          Length = 117

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 28  ELAVKDRENLWGFLKKISLDVPDEDKEFYSALPGQLSPT 66
           +L ++  E  +GF   + L +P E+  F S +   L PT
Sbjct: 77  QLLLQQAEEEFGFDHNMGLTIPCEEVAFKSLITSMLQPT 115


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.140    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,706,132
Number of Sequences: 28952
Number of extensions: 83337
Number of successful extensions: 145
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 141
Number of HSP's gapped (non-prelim): 5
length of query: 136
length of database: 12,070,560
effective HSP length: 74
effective length of query: 62
effective length of database: 9,928,112
effective search space: 615542944
effective search space used: 615542944
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)