GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000202-TA|BGIBMGA000202-PA|undefined
         (136 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912     28   3.0  

>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
          Length = 853

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 33  DRENLWGFLKKISLDVPDEDKE 54
           D+ENLW  L K+ + +  E+KE
Sbjct: 292 DKENLWDMLTKLKITLKAEEKE 313


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.140    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,173,399
Number of Sequences: 37544
Number of extensions: 92447
Number of successful extensions: 165
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 164
Number of HSP's gapped (non-prelim): 1
length of query: 136
length of database: 14,793,348
effective HSP length: 75
effective length of query: 61
effective length of database: 11,977,548
effective search space: 730630428
effective search space used: 730630428
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)