GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000202-TA|BGIBMGA000202-PA|undefined
         (136 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021488-10|CAA16368.2| 1247|Caenorhabditis elegans Hypothetical...    29   1.5  
AL021488-9|CAC42378.2| 1245|Caenorhabditis elegans Hypothetical ...    29   1.5  
AL021483-10|CAA16349.2| 1247|Caenorhabditis elegans Hypothetical...    29   1.5  
AL021483-9|CAC42374.2| 1245|Caenorhabditis elegans Hypothetical ...    29   1.5  
Z77670-4|CAB01249.2|  439|Caenorhabditis elegans Hypothetical pr...    28   2.0  
AF325178-1|AAG49583.1|  439|Caenorhabditis elegans CEH-32 protein.     28   2.0  
U80847-2|AAB37982.2|  475|Caenorhabditis elegans Hypothetical pr...    28   2.7  
AL132952-22|CAL90889.1|   79|Caenorhabditis elegans Hypothetical...    28   2.7  
AL132952-10|CAB61144.2|   61|Caenorhabditis elegans Hypothetical...    28   2.7  
U88311-8|AAB42341.2|  918|Caenorhabditis elegans Hypothetical pr...    26   8.2  

>AL021488-10|CAA16368.2| 1247|Caenorhabditis elegans Hypothetical
           protein Y45F10A.6a protein.
          Length = 1247

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 97  AEETREKKSLYFINHGVGSCPENTVAIHGLCVERI 131
           +++ REK + Y   +G G C   TV +H L +E +
Sbjct: 456 SDKCREKWNKYLQEYGTGVCMYRTVELHRLLLEGV 490


>AL021488-9|CAC42378.2| 1245|Caenorhabditis elegans Hypothetical
           protein Y45F10A.6b protein.
          Length = 1245

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 97  AEETREKKSLYFINHGVGSCPENTVAIHGLCVERI 131
           +++ REK + Y   +G G C   TV +H L +E +
Sbjct: 456 SDKCREKWNKYLQEYGTGVCMYRTVELHRLLLEGV 490


>AL021483-10|CAA16349.2| 1247|Caenorhabditis elegans Hypothetical
           protein Y45F10A.6a protein.
          Length = 1247

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 97  AEETREKKSLYFINHGVGSCPENTVAIHGLCVERI 131
           +++ REK + Y   +G G C   TV +H L +E +
Sbjct: 456 SDKCREKWNKYLQEYGTGVCMYRTVELHRLLLEGV 490


>AL021483-9|CAC42374.2| 1245|Caenorhabditis elegans Hypothetical
           protein Y45F10A.6b protein.
          Length = 1245

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 97  AEETREKKSLYFINHGVGSCPENTVAIHGLCVERI 131
           +++ REK + Y   +G G C   TV +H L +E +
Sbjct: 456 SDKCREKWNKYLQEYGTGVCMYRTVELHRLLLEGV 490


>Z77670-4|CAB01249.2|  439|Caenorhabditis elegans Hypothetical
           protein W05E10.3 protein.
          Length = 439

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 30  AVKDRENLWGF-LKKISLDVPDEDKEFYSALPGQLSP 65
           A K+++N+ G  LKK S D+ D D +F  ++    SP
Sbjct: 244 AAKNKQNIIGVELKKTSSDMSDSDDDFEDSMTDSPSP 280


>AF325178-1|AAG49583.1|  439|Caenorhabditis elegans CEH-32 protein.
          Length = 439

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 30  AVKDRENLWGF-LKKISLDVPDEDKEFYSALPGQLSP 65
           A K+++N+ G  LKK S D+ D D +F  ++    SP
Sbjct: 244 AAKNKQNIIGVELKKTSSDMSDSDDDFEDSMTDSPSP 280


>U80847-2|AAB37982.2|  475|Caenorhabditis elegans Hypothetical
           protein C17H11.1 protein.
          Length = 475

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 11/17 (64%), Positives = 13/17 (76%)

Query: 95  TGAEETREKKSLYFINH 111
           TGA E R+KKSL  +NH
Sbjct: 444 TGAREPRQKKSLTIVNH 460


>AL132952-22|CAL90889.1|   79|Caenorhabditis elegans Hypothetical
           protein Y51H4A.32 protein.
          Length = 79

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 116 CPENTVAIHGLCVERIEE 133
           CP+N + +HG CV+  EE
Sbjct: 56  CPDNQLCVHGQCVDPKEE 73


>AL132952-10|CAB61144.2|   61|Caenorhabditis elegans Hypothetical
           protein Y51H4A.10 protein.
          Length = 61

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 116 CPENTVAIHGLCVERIEE 133
           CP+N + +HG CV+  EE
Sbjct: 38  CPDNQLCVHGQCVDPKEE 55


>U88311-8|AAB42341.2|  918|Caenorhabditis elegans Hypothetical
           protein C10H11.1 protein.
          Length = 918

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 94  QTGAEETREK-KSLYFINHGVGSCPENTVAIHGLCVERIEELD 135
           +TG EE RE  +S     + +G     T   HGLC  RI+E+D
Sbjct: 566 KTGKEEERETGRSRIAFWYWLGE--HTTPKQHGLCALRIKEID 606


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.140    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,916,140
Number of Sequences: 27539
Number of extensions: 92088
Number of successful extensions: 158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 151
Number of HSP's gapped (non-prelim): 10
length of query: 136
length of database: 12,573,161
effective HSP length: 74
effective length of query: 62
effective length of database: 10,535,275
effective search space: 653187050
effective search space used: 653187050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)