Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000201-TA|BGIBMGA000201-PA|IPR001353|20S proteasome, A
and B subunits
         (232 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45)        297   4e-81
SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)                   76   3e-14
SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.003
SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)                  36   0.028
SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)                  33   0.20 
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_6320| Best HMM Match : Exo_endo_phos (HMM E-Value=4.8)              29   3.3  
SB_34262| Best HMM Match : efhand (HMM E-Value=6.3e-26)                28   7.5  
SB_6455| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   10.0 

>SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45)
          Length = 291

 Score =  297 bits (730), Expect = 4e-81
 Identities = 135/216 (62%), Positives = 174/216 (80%)

Query: 17  KQHRFEPYADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGC 76
           KQ  F PYA NGG+++AI+G+D+AVI +DTRLS GF I+TRD  K++KL+ STVLG +G 
Sbjct: 76  KQTYFSPYAFNGGTVLAISGEDFAVIASDTRLSQGFQIHTRDSPKVYKLTGSTVLGCSGF 135

Query: 77  WCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDG 136
             D LTLT+ + AR+QMYEH+H K+M+  A+AQMLSTMLYY+RFFPYY  N+LAGLDS+G
Sbjct: 136 HGDCLTLTKHISARLQMYEHDHGKAMSCTAIAQMLSTMLYYRRFFPYYTYNILAGLDSEG 195

Query: 137 KGCVYSYDPIGHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKD 196
           KGCV+S+DP+G   R  +RAGGSA+A LQPLLDNQIG KN + V   PL R+KA+AL+KD
Sbjct: 196 KGCVFSFDPVGSYEREVYRAGGSASALLQPLLDNQIGFKNQEGVPHTPLTRDKAVALVKD 255

Query: 197 VFISAAERDIYTGDSIYILIITASGIQEEKFELRKD 232
           VF SAAERDIYTGD++ I ++++ G+ EE F LR+D
Sbjct: 256 VFTSAAERDIYTGDAVIINVVSSEGVSEEAFPLRRD 291


>SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 909

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 43/146 (29%), Positives = 74/146 (50%), Gaps = 2/146 (1%)

Query: 27  NGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRL 86
           NG +I+A+ G +   I AD RL       + D +K+F++ E   +G  G   D  T++  
Sbjct: 77  NGAAIIAMVGKNCVAIAADRRLGIQAQTVSCDFQKIFQMGEKLFVGLPGLATDVQTISSR 136

Query: 87  LQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLD-SDGKGCVYSYDP 145
           L+ R+ +YE    + +       M+S +LY +RF PY+V  V+AGLD    +  + S D 
Sbjct: 137 LKFRLNLYELREGRPIKPKTFLSMVSNLLYERRFGPYFVEPVIAGLDPKTNEPFISSMDL 196

Query: 146 IG-HCARHNFRAGGSAAAQLQPLLDN 170
           IG      +F   G+ + Q+  + ++
Sbjct: 197 IGCPMETKDFVVSGTCSEQMYGMCES 222


>SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 21/92 (22%), Positives = 47/92 (51%)

Query: 26  DNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTR 85
           D+G + +A       ++  D+R + G  I ++  KK+ +++   +    G   D     R
Sbjct: 26  DHGTTTLAFKFKHGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCSFWER 85

Query: 86  LLQARMQMYEHEHNKSMTTPAVAQMLSTMLYY 117
           LL  + ++YE  + + ++  A +++L+ M+YY
Sbjct: 86  LLAKQCRIYELRNKERISVAAASKILANMVYY 117


>SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 215

 Score = 35.9 bits (79), Expect = 0.028
 Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 5/124 (4%)

Query: 28  GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 87
           G + V + G++  V+G + +         R  +K+  L +  ++   G   D   L    
Sbjct: 31  GSTAVGVRGNNIVVLGVERKAVAKLQ-EPRTVRKICTLDDHVLMAFAGLTADARILVNKA 89

Query: 88  QARMQMYEHEHNKSMTTPAVAQMLSTMLY-YKRFF---PYYVSNVLAGLDSDGKGCVYSY 143
           +   Q ++      +T   + + ++T+   Y +     P+ +S ++ G D DG   +Y  
Sbjct: 90  RVECQSHKLTVEDPVTLEYITRFIATLKQRYTQSNGRRPFGISTLIVGFDFDGTPRLYQT 149

Query: 144 DPIG 147
           DP G
Sbjct: 150 DPSG 153


>SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)
          Length = 938

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 17/64 (26%), Positives = 36/64 (56%)

Query: 28  GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 87
           G S++ I  +   ++ ADT  S G     R+  +L +++E+T++GA G + D   +  +L
Sbjct: 875 GTSVLGIKFNGGVLMAADTLGSYGSLARYRNISRLMRVNENTIIGAAGDYADFQYIKSVL 934

Query: 88  QARM 91
           + ++
Sbjct: 935 EQKV 938


>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4700

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 6/61 (9%)

Query: 168  LDNQIGLKNMQNV---TEAPLPREKALALLKDVFISAAERDIYTGDSIYILIITASGIQE 224
            L  + GLKN+  V   T+A +P E  L L+ D+  S     +Y  D +  +I   SG++ 
Sbjct: 3037 LCTKAGLKNIGTVFLLTDAQVPEENFLVLINDLLASGEIPGLYPDDEVENII---SGVRN 3093

Query: 225  E 225
            E
Sbjct: 3094 E 3094


>SB_6320| Best HMM Match : Exo_endo_phos (HMM E-Value=4.8)
          Length = 845

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 32  VAIAGD--DYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTL 83
           VA+  D  D   +GAD R   G +IY RD   + ++  S    A  C C TL L
Sbjct: 249 VALEADLRDRGWLGADLRSKGGVAIYVRDTISVIEIKRSE---AYECLCVTLDL 299


>SB_34262| Best HMM Match : efhand (HMM E-Value=6.3e-26)
          Length = 354

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 87  LQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCV 140
           +Q   ++++ ++N S+    V ++L   L  + F  Y V  +L G D DG G V
Sbjct: 292 MQETFRVFDRDNNNSIGVEEVQRVLK--LLGQDFKDYEVEAMLQGADYDGDGTV 343


>SB_6455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 55 YTRDQKKLFKLSESTVLGATGCWCDTLTLT 84
          + + Q K+F    S V   TG WCD L ++
Sbjct: 25 WAKMQNKVFGPENSRVFRETGAWCDLLGMS 54


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.135    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,328,009
Number of Sequences: 59808
Number of extensions: 282235
Number of successful extensions: 683
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 678
Number of HSP's gapped (non-prelim): 9
length of query: 232
length of database: 16,821,457
effective HSP length: 80
effective length of query: 152
effective length of database: 12,036,817
effective search space: 1829596184
effective search space used: 1829596184
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)