Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000201-TA|BGIBMGA000201-PA|IPR001353|20S proteasome, A
and B subunits
(232 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g60820.1 68416.m06804 20S proteasome beta subunit F1 (PBF1) 227 6e-60
At1g21720.1 68414.m02719 20S proteasome beta subunit C1 (PBC1) (... 80 1e-15
At1g77440.1 68414.m09018 20S proteasome beta subunit C (PBC2) id... 77 8e-15
At4g31300.1 68417.m04441 20S proteasome beta subunit A (PBA1) (P... 53 1e-07
At3g22630.1 68416.m02857 20S proteasome beta subunit D (PBD1) (P... 48 7e-06
At4g14800.1 68417.m02275 20S proteasome beta subunit D2 (PBD2) (... 46 2e-05
At3g26340.1 68416.m03286 20S proteasome beta subunit E, putative... 46 2e-05
At1g13060.1 68414.m01514 20S proteasome beta subunit E1 (PBE1) (... 46 3e-05
At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2) (P... 42 4e-04
At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2) (P... 42 4e-04
At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1) id... 41 8e-04
At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1) id... 41 8e-04
At1g56450.1 68414.m06492 20S proteasome beta subunit G1 (PBG1) (... 36 0.023
At5g35590.1 68418.m04237 20S proteasome alpha subunit A1 (PAA1) ... 32 0.29
At2g05840.1 68415.m00632 20S proteasome alpha subunit A2 (PAA2) ... 32 0.29
At2g27020.1 68415.m03244 20S proteasome alpha subunit G (PAG1) (... 31 0.50
At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2) ... 30 1.5
At4g26920.1 68417.m03874 hypothetical protein 29 2.0
At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1) ... 29 3.5
At4g07435.1 68417.m01141 cytochrome P-450 aromatase-related simi... 28 4.7
>At3g60820.1 68416.m06804 20S proteasome beta subunit F1 (PBF1)
Length = 223
Score = 227 bits (554), Expect = 6e-60
Identities = 110/221 (49%), Positives = 150/221 (67%), Gaps = 5/221 (2%)
Query: 17 KQH-RFEPYADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATG 75
KQH + PY +NGG+ VAIAG DY VI ADTR+STG+SI +RD K+ KL++ VL ++G
Sbjct: 3 KQHANWSPYDNNGGTCVAIAGSDYCVIAADTRMSTGYSILSRDYSKIHKLADRAVLSSSG 62
Query: 76 CWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSD 135
D L ++L++R +Y+H+HNK M+ PA+AQ+LS LY+KRFFPYY NVL GLD +
Sbjct: 63 FQADVKALQKVLKSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLDEE 122
Query: 136 GKGCVYSYDPIGHCARHNFRAGGSAAAQLQPLLDNQI----GLKNMQNVTEAPLPREKAL 191
GKGCV++YD +G R + A GS + + P LDNQ+ L + + PL +A+
Sbjct: 123 GKGCVFTYDAVGSYERVGYGAQGSGSTLIMPFLDNQLKSPSPLLLPKQDSNTPLSEAEAV 182
Query: 192 ALLKDVFISAAERDIYTGDSIYILIITASGIQEEKFELRKD 232
L+K VF SA ERDIYTGD + I+I+ A GI+ E +LRKD
Sbjct: 183 DLVKTVFASATERDIYTGDKLEIMILKADGIKTELMDLRKD 223
>At1g21720.1 68414.m02719 20S proteasome beta subunit C1 (PBC1)
(PRCT) almost identical to GB:AAC32069 from [Arabidopsis
thaliana], EST gb|T76747 comes from this gene; identical
to cDNA proteasome subunit prct GI:2511567
Length = 204
Score = 79.8 bits (188), Expect = 1e-15
Identities = 53/207 (25%), Positives = 95/207 (45%), Gaps = 10/207 (4%)
Query: 27 NGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRL 86
NG ++VA+ G + I +D RL D +++ K+ + +G +G D TL +
Sbjct: 7 NGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRVFIGLSGLATDVQTLYQR 66
Query: 87 LQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPI 146
L R ++Y+ + M A ++S +LY KRF PY V+AGL D K + + D I
Sbjct: 67 LVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPYLCQPVIAGLGDDDKPFICTMDSI 126
Query: 147 G-HCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAERD 205
G +F G+A+ L + + + + E+ + +S+ +RD
Sbjct: 127 GAKELAKDFVVSGTASESLYGA---------CEAMYKPDMEAEELFETISQALLSSVDRD 177
Query: 206 IYTGDSIYILIITASGIQEEKFELRKD 232
+G ++ I+T + I+E + R D
Sbjct: 178 CLSGWGGHVYIVTPTEIKERILKGRMD 204
>At1g77440.1 68414.m09018 20S proteasome beta subunit C (PBC2)
identical to residues 14-204 of 20S proteasome beta
subunit PBC2 GB:AAC32069 [Arabidopsis thaliana]
Length = 204
Score = 77.4 bits (182), Expect = 8e-15
Identities = 50/207 (24%), Positives = 93/207 (44%), Gaps = 10/207 (4%)
Query: 27 NGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRL 86
NG ++VA+ G + I +D RL D +++ K+ + +G +G D TL +
Sbjct: 7 NGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDVQTLYQR 66
Query: 87 LQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPI 146
L R ++Y+ + M A ++S +LY KRF P+ V+AGL D K + + D I
Sbjct: 67 LVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGDDNKPFICTMDSI 126
Query: 147 G-HCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAERD 205
G +F G+A+ L + + + E+ + +S+ +RD
Sbjct: 127 GAKELAKDFVVSGTASESLYGACEAMF---------KPDMEAEELFETISQALLSSVDRD 177
Query: 206 IYTGDSIYILIITASGIQEEKFELRKD 232
+G ++ ++T ++E + R D
Sbjct: 178 CLSGWGGHVYVVTPKEVKERILKGRMD 204
>At4g31300.1 68417.m04441 20S proteasome beta subunit A (PBA1)
(PRCD) identical to cDNA proteasome subunit prcd
GI:2511593
Length = 233
Score = 53.2 bits (122), Expect = 1e-07
Identities = 45/195 (23%), Positives = 83/195 (42%), Gaps = 10/195 (5%)
Query: 28 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 87
G +I+ + + V+GAD+R STG + R K+ +L+++ + +G D+ ++ +
Sbjct: 12 GTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQVVSDYV 71
Query: 88 QARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIG 147
+ + + +H + T A ++ ML Y ++ G D G +Y G
Sbjct: 72 RYFLHQHTIQHGQPATVKVSANLI-RMLAYNNKNMLQTGLIVGGWDKYEGGKIYGIPLGG 130
Query: 148 HCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAERDIY 207
F GGS ++ L D Q NM +E+A L+ A RD
Sbjct: 131 TVVEQPFAIGGSGSSYLYGFFD-QAWKDNM--------TKEEAEQLVVKAVSLAIARDGA 181
Query: 208 TGDSIYILIITASGI 222
+G + +II + G+
Sbjct: 182 SGGVVRTVIINSEGV 196
>At3g22630.1 68416.m02857 20S proteasome beta subunit D (PBD1)
(PRGB) identical to GB:CAA74026 from [Arabidopsis
thaliana] ( FEBS Lett. (1997) 416 (3), 281-285);
identical to cDNA proteasome subunit prgb GI:2511589
Length = 204
Score = 47.6 bits (108), Expect = 7e-06
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 31 IVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLLQAR 90
+ + G+ +A++ ADT ++ ++ K+ L ++ A+G D + T +Q
Sbjct: 4 VFGLVGNGFAIVAADTSAVHSILLHKNNEDKIMVLDSHKLVAASGEPGDRVQFTEYVQKN 63
Query: 91 MQMYEHEHNKSMTTPAVAQML-STMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPI 146
+ +Y+ + +TT A A + R PY V+ ++AG D + +Y D I
Sbjct: 64 VSLYKFRNGIPLTTAAAANFTRGELATALRKNPYSVNILMAGYDDESGASLYYIDYI 120
>At4g14800.1 68417.m02275 20S proteasome beta subunit D2 (PBD2)
(PRCGA) identical to SP|O24633 Proteasome subunit beta
type 2-2 (EC 3.4.25.1) (20S proteasome alpha subunit D2)
{Arabidopsis thaliana}, cDNA proteasome subunit prcga
GI:2511571
Length = 199
Score = 46.4 bits (105), Expect = 2e-05
Identities = 38/195 (19%), Positives = 78/195 (40%), Gaps = 10/195 (5%)
Query: 31 IVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLLQAR 90
+ + G+ +A++ ADT ++ + K+ L ++ A+G D + T +Q
Sbjct: 4 VFGLVGNGFAIVAADTSAVHSILLHKNKEDKIMTLDSHKLVAASGEPGDRVQFTEYVQKN 63
Query: 91 MQMYEHEHNKSMTTPAVAQML-STMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIGHC 149
+ +Y+ + ++T A A + R PY V+ ++AG D + +Y D I
Sbjct: 64 VSLYQFRNGIPLSTAAAANFTRGELATALRKNPYSVNILMAGYDKEAGASLYYIDYIATL 123
Query: 150 ARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAERDIYTG 209
+ + A G + L M + + E+A+ L+ + R +
Sbjct: 124 HKVDKGAFG---------YGSYFSLSTMDRHYRSDMSVEEAIELVDKCILEIRSRLVIAP 174
Query: 210 DSIYILIITASGIQE 224
+ I I+ G +E
Sbjct: 175 PNFVIKIVDKDGARE 189
>At3g26340.1 68416.m03286 20S proteasome beta subunit E, putative
very strong similarity to SP|O23717 Proteasome subunit
beta type 5 precursor (EC 3.4.25.1) (20S proteasome
subunit E) (Proteasome epsilon chain) {Arabidopsis
thaliana}
Length = 273
Score = 46.4 bits (105), Expect = 2e-05
Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 3/156 (1%)
Query: 28 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 87
G + +A + ++ AD+R S G I ++ KK+ +++ + G D R L
Sbjct: 57 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNL 116
Query: 88 QARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIG 147
+ +++E + + ++ +++L+ MLY R V ++AG D G G Y + G
Sbjct: 117 GIKCRLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGG 176
Query: 148 HCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEA 183
F GS + +LD+ G K +V EA
Sbjct: 177 RLKGDRFSV-GSGSPYAYGVLDS--GYKFDMSVEEA 209
>At1g13060.1 68414.m01514 20S proteasome beta subunit E1 (PBE1)
(PRCE) identical to GB:O23717; identical to cDNA
proteasome subunit prce GI:2511595
Length = 274
Score = 45.6 bits (103), Expect = 3e-05
Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 3/143 (2%)
Query: 41 VIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLLQARMQMYEHEHNK 100
++ AD+R S G I ++ KK+ +++ + G D R L + +++E + +
Sbjct: 70 MVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKR 129
Query: 101 SMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIGHCARHNFRAGGSA 160
++ +++L+ MLY R V ++AG D G G Y + G F GS
Sbjct: 130 RISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGGRLKGDRFSV-GSG 188
Query: 161 AAQLQPLLDNQIGLKNMQNVTEA 183
+ +LD+ G K +V EA
Sbjct: 189 SPYAYGVLDS--GYKYDMSVEEA 209
>At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2)
(PRCFC) identical to 20S proteasome beta subunit PBB2
[Arabidopsis thaliana] GI:3421104, cDNA proteasome
subunit prcfc GI:2511575
Length = 274
Score = 41.9 bits (94), Expect = 4e-04
Identities = 37/195 (18%), Positives = 86/195 (44%), Gaps = 11/195 (5%)
Query: 24 YADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTL 83
+ G +IV + D ++GADTR + G + ++ +K+ ++ + G DT +
Sbjct: 35 FLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAV 94
Query: 84 TRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSY 143
T ++ ++++++ ++ + +L L+ + + VL G+D G +++
Sbjct: 95 TDMVSSQLRLHRYQTGRDSRVVTALTLLKKHLFSYQGH-VSAALVLGGVDITGPH-LHTI 152
Query: 144 DPIGHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAE 203
P G F GS + + + K + +T R++ + L+ + S
Sbjct: 153 YPHGSTDTLPFATMGSGSLAAMSVFE----AKYKEGLT-----RDEGIKLVAEAICSGIF 203
Query: 204 RDIYTGDSIYILIIT 218
D+ +G ++ I +IT
Sbjct: 204 NDLGSGSNVDICVIT 218
>At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2)
(PRCFC) identical to 20S proteasome beta subunit PBB2
[Arabidopsis thaliana] GI:3421104, cDNA proteasome
subunit prcfc GI:2511575
Length = 274
Score = 41.9 bits (94), Expect = 4e-04
Identities = 37/195 (18%), Positives = 86/195 (44%), Gaps = 11/195 (5%)
Query: 24 YADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTL 83
+ G +IV + D ++GADTR + G + ++ +K+ ++ + G DT +
Sbjct: 35 FLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAV 94
Query: 84 TRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSY 143
T ++ ++++++ ++ + +L L+ + + VL G+D G +++
Sbjct: 95 TDMVSSQLRLHRYQTGRDSRVVTALTLLKKHLFSYQGH-VSAALVLGGVDITGPH-LHTI 152
Query: 144 DPIGHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAE 203
P G F GS + + + K + +T R++ + L+ + S
Sbjct: 153 YPHGSTDTLPFATMGSGSLAAMSVFE----AKYKEGLT-----RDEGIKLVAEAICSGIF 203
Query: 204 RDIYTGDSIYILIIT 218
D+ +G ++ I +IT
Sbjct: 204 NDLGSGSNVDICVIT 218
>At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1)
identical to 20S proteasome beta subunit PBB1 (PBB1)
GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
677-692 (1998)); contains Pfam profile: PF00227
proteasome A-type and B-type;
Length = 273
Score = 40.7 bits (91), Expect = 8e-04
Identities = 37/195 (18%), Positives = 86/195 (44%), Gaps = 11/195 (5%)
Query: 24 YADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTL 83
+ G +IV + D ++GADTR + G + ++ +K+ ++ + G DT +
Sbjct: 35 FLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAV 94
Query: 84 TRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSY 143
T ++ ++++++ ++ + +L L+ + + VL G+D G +++
Sbjct: 95 TDMVSSQLRLHRYQTGRDSRVITALTLLKKHLFSYQGH-VSAALVLGGVDITGPH-LHTI 152
Query: 144 DPIGHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAE 203
P G F GS + + + K + +T R++ + L+ + S
Sbjct: 153 YPHGSTDTLPFATMGSGSLAAMSVFE----AKYKEGLT-----RDEGIKLVAESICSGIF 203
Query: 204 RDIYTGDSIYILIIT 218
D+ +G ++ I +IT
Sbjct: 204 NDLGSGSNVDICVIT 218
>At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1)
identical to 20S proteasome beta subunit PBB1 (PBB1)
GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
677-692 (1998)); contains Pfam profile: PF00227
proteasome A-type and B-type;
Length = 267
Score = 40.7 bits (91), Expect = 8e-04
Identities = 37/195 (18%), Positives = 86/195 (44%), Gaps = 11/195 (5%)
Query: 24 YADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTL 83
+ G +IV + D ++GADTR + G + ++ +K+ ++ + G DT +
Sbjct: 35 FLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAV 94
Query: 84 TRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSY 143
T ++ ++++++ ++ + +L L+ + + VL G+D G +++
Sbjct: 95 TDMVSSQLRLHRYQTGRDSRVITALTLLKKHLFSYQGH-VSAALVLGGVDITGPH-LHTI 152
Query: 144 DPIGHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAE 203
P G F GS + + + K + +T R++ + L+ + S
Sbjct: 153 YPHGSTDTLPFATMGSGSLAAMSVFE----AKYKEGLT-----RDEGIKLVAESICSGIF 203
Query: 204 RDIYTGDSIYILIIT 218
D+ +G ++ I +IT
Sbjct: 204 NDLGSGSNVDICVIT 218
>At1g56450.1 68414.m06492 20S proteasome beta subunit G1 (PBG1)
(PRCH) identical to 20S proteasome beta subunit (PBG1)
GI:3421123 [Arabidopsis thaliana]; identical to cDNA
proteasome subunit prch GI:2511597
Length = 246
Score = 35.9 bits (79), Expect = 0.023
Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 5/157 (3%)
Query: 18 QHRFEPYADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCW 77
Q PY G SIVAI D ++ +D S G ++ ++ +++ + + ++LGA+G
Sbjct: 22 QRTLYPYV-TGTSIVAIKYKDGVLMASDMGGSYGSTLRYKNIERVKAIGKHSLLGASGEI 80
Query: 78 CDTLTLTRLL-QARMQMYEHEHNKSMTTPAVAQMLSTMLYYKR--FFPYYVSNVLAGLDS 134
D + R L + + + S+ + L+ ++Y +R F P + + VL G+
Sbjct: 81 SDFQEILRYLDELTLNDNMWDDGNSLGPKEIHNYLTRVMYNRRNKFNPLWNTLVLGGV-K 139
Query: 135 DGKGCVYSYDPIGHCARHNFRAGGSAAAQLQPLLDNQ 171
+GK + IG + A G +P+L ++
Sbjct: 140 NGKSYLGMVSMIGVSFEDDHVATGFGNHLARPILRDE 176
>At5g35590.1 68418.m04237 20S proteasome alpha subunit A1 (PAA1)
(PRC1) identical to proteasome subunit alpha type 6-1
SP:O81146 GI:12643647 from [Arabidopsis thaliana];
identical to cDNA proteasome subunit prc1 GI:2511587
Length = 246
Score = 32.3 bits (70), Expect = 0.29
Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 62 LFKLSESTVLGATGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLS--TMLYYKR 119
LF +++ L ATG D +L + + + + + M +A+ ++ + +Y +
Sbjct: 69 LFPITKYIGLVATGITADARSLVQQARNQAAEFRFTYGYEMPVDILAKWIADKSQVYTQH 128
Query: 120 FF--PYYVSNVLAGLDSDGKGCVYSYDPIGHCARHNFRAGGSAAAQLQPLLDNQI 172
+ P V ++ G+D + +Y DP GH H + G + L+ ++
Sbjct: 129 AYMRPLGVVAMVMGVDEENGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKM 183
>At2g05840.1 68415.m00632 20S proteasome alpha subunit A2 (PAA2)
identical to GB:AF043519
Length = 246
Score = 32.3 bits (70), Expect = 0.29
Identities = 23/115 (20%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Query: 62 LFKLSESTVLGATGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLS--TMLYYKR 119
LF +++ L ATG D+ +L + + + ++ M +A+ ++ + +Y +
Sbjct: 69 LFPVTKYLGLLATGMTADSRSLVQQARNEAAEFRFQYGYEMPADILAKWIADKSQVYTQH 128
Query: 120 FF--PYYVSNVLAGLDSDGKGCVYSYDPIGHCARHNFRAGGSAAAQLQPLLDNQI 172
+ P V ++ G+D + +Y DP GH H + G + L+ ++
Sbjct: 129 AYMRPLGVVAMVLGIDEERGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKM 183
>At2g27020.1 68415.m03244 20S proteasome alpha subunit G (PAG1)
(PRC8) identical to proteasome subunit alpha type 3
SP:O23715, GI:12644056 from [Arabidopsis thaliana];
identical to cDNA proteasome subunit prc8 GI:2511591
Length = 249
Score = 31.5 bits (68), Expect = 0.50
Identities = 29/160 (18%), Positives = 67/160 (41%), Gaps = 10/160 (6%)
Query: 26 DNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTR 85
DN G++V I D V+G + +L + +++ + + G D +
Sbjct: 32 DNSGTVVGIKCKDGIVMGVE-KLIASKMMLPGSNRRIHSVHRHAGMAVAGLAADGRQIVA 90
Query: 86 LLQARMQMYEHEHNKSMTTPAVAQMLSTMLY----YKRFFPYYVSNVLAGLDSDGKGCVY 141
++ + YE + ++ +++ +++ ++ Y P+ +L G D DG +Y
Sbjct: 91 RAKSEARSYESVYGDAVPVKELSERVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQ-LY 149
Query: 142 SYDPIGHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVT 181
+P G ++R G+A + + +I N+ +T
Sbjct: 150 MIEPSG----ISYRYFGAAIGKGKQAAKTEIEKLNLSEMT 185
>At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2)
(PRC2B) (PRS1) identical to GB:AAC32063 from
[Arabidopsis thaliana] (Genetics 149 (2), 677-692
(1998)); identical to cDNA proteasome subunit prc2b
GI:2511585
Length = 277
Score = 29.9 bits (64), Expect = 1.5
Identities = 32/172 (18%), Positives = 72/172 (41%), Gaps = 14/172 (8%)
Query: 28 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 87
G + + + + V+ + + S + Q+K+FK+ + + G D L+R +
Sbjct: 32 GSAAIGLRSRSHVVLACVNKAQSELSSH---QRKIFKVDDHIGVAIAGLTADGRVLSRYM 88
Query: 88 QARMQMYEHEHNKSMTTPAVAQMLS------TMLYYKRFFPYYVSNVLAGLDSDGKGCVY 141
++ + + + + L+ T +KR PY V ++ GLD G Y
Sbjct: 89 RSESINHSFTYESPLPVGRLVVHLADKAQVCTQRSWKR--PYGVGLLVGGLDESGAHLYY 146
Query: 142 SYDPIGHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALAL 193
+ P G+ + A GS + + L+ + ++ Q ++ L ++ +A+
Sbjct: 147 NC-PSGNYFEYQAFAIGSRSQAAKTYLERK--FESFQESSKEDLIKDAIMAI 195
>At4g26920.1 68417.m03874 hypothetical protein
Length = 461
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 109 QMLSTMLYYKRFFPYYVSNV 128
+ML+ YY RFFP+Y NV
Sbjct: 93 EMLTLNEYYSRFFPWYAKNV 112
>At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1)
(gb|AAC32062.1)
Length = 278
Score = 28.7 bits (61), Expect = 3.5
Identities = 29/150 (19%), Positives = 61/150 (40%), Gaps = 12/150 (8%)
Query: 28 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 87
G + + + + V+ + + S + Q+K+FK+ + + G D L+R +
Sbjct: 32 GSAAIGLRSRSHVVLACVNKAQSELSSH---QRKIFKVDDHIGVAIAGLTADGRVLSRYM 88
Query: 88 QARMQMYEHEHNKSMTTPAVAQMLS------TMLYYKRFFPYYVSNVLAGLDSDGKGCVY 141
++ + + + + L+ T +KR PY V ++ GLD G Y
Sbjct: 89 RSESINHSFTYESPLPVGRLVVHLADKAQVCTQRSWKR--PYGVGLLVGGLDESGAHLYY 146
Query: 142 SYDPIGHCARHNFRAGGSAAAQLQPLLDNQ 171
+ P G+ + A GS + + L+ +
Sbjct: 147 NC-PSGNYFEYQAFAIGSRSQAAKTYLERR 175
>At4g07435.1 68417.m01141 cytochrome P-450 aromatase-related similar
to minor outer capsid protein VP4 (GI:13446784) [Human
rotavirus C]; similar to cytochrome P-450 aromatase
(GI:21170) [Gallus gallus];
Length = 193
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 139 CVYSYDPIGHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVF 198
C Y Y IG+ GG + PL DN++ +K +Q +P+P ++ + V
Sbjct: 6 CAYFY--IGYDVPTVLNEGGGG--RKPPLTDNKLRIKFIQTTKMSPVPNRESSNFFRFVA 61
Query: 199 ISAAERDIYTGDSIY 213
S E +++
Sbjct: 62 FSMIENKTIDSSTVH 76
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.319 0.135 0.395
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,223,501
Number of Sequences: 28952
Number of extensions: 201917
Number of successful extensions: 417
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 399
Number of HSP's gapped (non-prelim): 20
length of query: 232
length of database: 12,070,560
effective HSP length: 79
effective length of query: 153
effective length of database: 9,783,352
effective search space: 1496852856
effective search space used: 1496852856
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)
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