Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000201-TA|BGIBMGA000201-PA|IPR001353|20S proteasome, A
and B subunits
(232 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0656 + 19267392-19267432,19267530-19267637,19269114-192691... 216 1e-56
08_02_1353 + 26335306-26335448,26336025-26336106,26336322-263364... 204 4e-53
02_01_0614 - 4599035-4599083,4599209-4599303,4599410-4599494,460... 85 6e-17
06_03_0903 - 25816395-25816493,25816695-25816779,25817390-258174... 77 2e-14
03_05_0782 - 27658855-27659211,27660417-27660540,27660714-27660871 65 4e-11
06_01_0285 - 2090427-2090558,2091045-2091119,2091334-2091407,209... 59 3e-09
02_05_0884 - 32483735-32483866,32484417-32484491,32484707-324847... 59 3e-09
09_04_0728 - 19771975-19772093,19772131-19772224,19772322-197725... 45 5e-05
05_01_0588 + 5278013-5278153,5278641-5278782,5278923-5279019,527... 43 2e-04
05_05_0306 - 23977543-23977614,23977709-23977799,23978296-239783... 38 0.009
02_04_0371 + 22434710-22435102,22435428-22435624,22435707-224358... 33 0.26
03_05_0006 + 19527479-19528769,19529693-19530105,19530220-195304... 32 0.45
03_05_0890 - 28547462-28547545,28548451-28548528,28548641-285488... 31 0.79
02_04_0055 - 19290975-19292312 31 0.79
01_06_0946 + 33220910-33222221,33223373-33223734,33223863-332240... 30 1.4
02_04_0641 - 24667637-24667753,24670088-24670324 29 3.2
03_01_0568 - 4192514-4192606,4192694-4192753,4192837-4192932,419... 29 4.2
06_01_0387 - 2770387-2770514,2770963-2771063,2771152-2771255,277... 28 7.4
06_01_0493 - 3536207-3537056,3537603-3537826,3538234-3538503,353... 27 9.8
>09_04_0656 +
19267392-19267432,19267530-19267637,19269114-19269195,
19269637-19269766,19269882-19270024,19270198-19270284,
19270384-19270458
Length = 221
Score = 216 bits (527), Expect = 1e-56
Identities = 105/213 (49%), Positives = 145/213 (68%), Gaps = 4/213 (1%)
Query: 24 YADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTL 83
Y +NGG+ VAIAG DY V+ ADTRLS G++I TRD K+ +L++ L ++G D L
Sbjct: 9 YENNGGTCVAIAGADYCVVAADTRLSVGYNILTRDHSKICELADKCALASSGFQGDIKAL 68
Query: 84 TRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSY 143
+ L AR +Y+H+HNK M+ PA+AQ+LS LYYKRFFPYY NVL GLDS+GKGCV++Y
Sbjct: 69 HKNLAARELLYQHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVFTY 128
Query: 144 DPIGHCARHNFRAGGSAAAQLQPLLDNQIGLKN--MQNVTEA--PLPREKALALLKDVFI 199
D +G R + A G+ +A + P+LDNQ+ + + +A PL +A+ L+KDVF
Sbjct: 129 DAVGSYERTGYSAQGTGSALIMPVLDNQLKSPSPLLLPARDAVTPLSETEAVDLVKDVFA 188
Query: 200 SAAERDIYTGDSIYILIITASGIQEEKFELRKD 232
SA ERDIYTGD + I++I +G + E +LRKD
Sbjct: 189 SATERDIYTGDKLEIVVINKAGTKREYIDLRKD 221
>08_02_1353 +
26335306-26335448,26336025-26336106,26336322-26336451,
26336486-26336548,26336549-26336691,26336827-26336913,
26337014-26337088
Length = 240
Score = 204 bits (499), Expect = 4e-53
Identities = 111/238 (46%), Positives = 147/238 (61%), Gaps = 25/238 (10%)
Query: 20 RFEPYADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCD 79
RFE Y +NGG+ VA+AG DY V+ ADTRLS G+SI +RD K+ L++ VL ++G D
Sbjct: 3 RFEVYENNGGTCVAVAGADYCVVAADTRLSVGYSILSRDSSKIAHLADKCVLASSGFQGD 62
Query: 80 TLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSD---- 135
L R L A+ +YEH HNK M+ PA+AQ+LS LYYKRFFPYY NVL GLDS+
Sbjct: 63 VKALQRNLTAKELLYEHNHNKKMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEVAAH 122
Query: 136 -----------------GKGCVYSYDPIGHCARHNFRAGGSAAAQLQPLLDNQIGLKN-- 176
GKGCV++YD +G R + A G+ AA + P+LDNQ+ +
Sbjct: 123 QYERMITTCENIFSSFAGKGCVFTYDAVGSYERTGYSAQGTGAALMMPVLDNQLKSPSPL 182
Query: 177 MQNVTEA--PLPREKALALLKDVFISAAERDIYTGDSIYILIITASGIQEEKFELRKD 232
+ +A PL + A+ L+KDVF SA ERDIYTGD + I++I ++G E ELRKD
Sbjct: 183 LLPARDAVTPLSQSDAVDLVKDVFASATERDIYTGDKLEIVVINSAGSHREFIELRKD 240
>02_01_0614 -
4599035-4599083,4599209-4599303,4599410-4599494,
4600107-4600196,4600772-4600879,4600983-4601197
Length = 213
Score = 84.6 bits (200), Expect = 6e-17
Identities = 55/207 (26%), Positives = 99/207 (47%), Gaps = 10/207 (4%)
Query: 27 NGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRL 86
NG ++VA+ G + I +D RL D +++FK+ + +G +G D TL +
Sbjct: 16 NGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKIHDKLYIGLSGLATDAQTLYQR 75
Query: 87 LQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPI 146
L R ++Y+ + M A A ++S +LY KRF PY+ V+AGL + + + + D I
Sbjct: 76 LVFRHKLYQLREERDMKPQAFASLVSALLYEKRFGPYFCQPVIAGLGDNDEPFICTMDCI 135
Query: 147 G-HCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAERD 205
G +F G+A+ L ++M + P E+ + ++ +RD
Sbjct: 136 GAKELAKDFVVSGTASESLYG------ACESMYKPSMEP---EELFETISQALQASVDRD 186
Query: 206 IYTGDSIYILIITASGIQEEKFELRKD 232
+G Y+L++T + +QE + R D
Sbjct: 187 CLSGWGGYVLLVTPTEVQERVIKGRMD 213
>06_03_0903 -
25816395-25816493,25816695-25816779,25817390-25817479,
25818566-25818673,25818771-25818952,25819032-25819216,
25820812-25820971
Length = 302
Score = 76.6 bits (180), Expect = 2e-14
Identities = 50/192 (26%), Positives = 90/192 (46%), Gaps = 10/192 (5%)
Query: 27 NGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRL 86
NG ++VA+ G + I +D RL D +++FK+ + +G +G D TL +
Sbjct: 120 NGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKIHDKLYIGLSGLATDAQTLYQR 179
Query: 87 LQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPI 146
L R ++Y+ + M A ++S +LY KRF PY+ V+AGL D + + + D I
Sbjct: 180 LVFRHKLYQLREERDMKPQTFASLVSALLYEKRFGPYFCQPVIAGLGEDNEPFICTMDCI 239
Query: 147 G-HCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAERD 205
G +F G+A+ L ++ NM+ E+ + S+ +RD
Sbjct: 240 GAKELAKDFVVSGTASESLYGACESMY-KPNME--------PEELFETISQALQSSVDRD 290
Query: 206 IYTGDSIYILII 217
+G ++L++
Sbjct: 291 CLSGWGGFVLLV 302
>03_05_0782 - 27658855-27659211,27660417-27660540,27660714-27660871
Length = 212
Score = 65.3 bits (152), Expect = 4e-11
Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 31 IVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLLQAR 90
++ + G D+AV+ ADT ++ D+ K+ L ++GA+G D + T +Q
Sbjct: 4 VIGVVGRDFAVVAADTSAVQSILVHKTDEDKVMVLDSHKLMGASGEPGDRVQFTEFIQKN 63
Query: 91 MQMYEHEHNKSMTTPAVAQML-STMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPI 146
+ +Y+ +N ++T A A + R PYYV+ +LAG DSD +Y D I
Sbjct: 64 LHLYQFRNNIPLSTAATANFTRGELATALRKNPYYVNVLLAGYDSDVGASLYYIDYI 120
>06_01_0285 -
2090427-2090558,2091045-2091119,2091334-2091407,
2091792-2091903,2092036-2092108,2092291-2092346,
2092679-2092755,2093384-2093525
Length = 246
Score = 59.3 bits (137), Expect = 3e-09
Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 7/172 (4%)
Query: 28 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 87
G +IV + D V+ AD+R STG + R K+ +L+++ + +G D T+++
Sbjct: 25 GTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAAD----TQVI 80
Query: 88 QARMQMYEHEHNKSMTTPA---VAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYD 144
++ + H+H + PA VA L +L Y+ ++ G D G ++S
Sbjct: 81 SEYVRYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQAGMIVGGWDKYEGGQIFSVP 140
Query: 145 PIGHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKD 196
G R F GGS ++ L LLD++ Q E + + +LA+ +D
Sbjct: 141 LGGTILRQPFAIGGSGSSYLYGLLDHEWKEGMSQEEAEKFVVKVVSLAIARD 192
>02_05_0884 -
32483735-32483866,32484417-32484491,32484707-32484780,
32485180-32485291,32485476-32485548,32485674-32485729,
32486046-32486122,32486799-32486940
Length = 246
Score = 59.3 bits (137), Expect = 3e-09
Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 7/172 (4%)
Query: 28 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 87
G +IV + D V+ AD+R STG + R K+ +L+++ + +G D T+++
Sbjct: 25 GTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYICRSGSAAD----TQVI 80
Query: 88 QARMQMYEHEHNKSMTTPA---VAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYD 144
++ + H+H + PA VA L +L Y+ ++ G D G ++S
Sbjct: 81 SDYVRYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQAGMIVGGWDKYEGGQIFSVP 140
Query: 145 PIGHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKD 196
G R F GGS ++ L LLD++ Q E + + +LA+ +D
Sbjct: 141 LGGTILRQPFAIGGSGSSYLYGLLDHEWKEGMSQEEAEKFVVKVVSLAIARD 192
>09_04_0728 -
19771975-19772093,19772131-19772224,19772322-19772507,
19772596-19772767,19772854-19772983,19773060-19773136,
19774109-19774194,19774508-19774585,19775916-19776045,
19776379-19776423,19776508-19776618,19776801-19777057,
19777153-19777302,19777899-19778008,19778426-19778546
Length = 621
Score = 45.2 bits (102), Expect = 5e-05
Identities = 32/129 (24%), Positives = 67/129 (51%), Gaps = 7/129 (5%)
Query: 14 PGAKQHRFEPYADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGA 73
PG ++ ++ PY G SI+A+ D ++ +DT S G ++ + +++ + + +++GA
Sbjct: 357 PGTQRTQY-PYV-TGSSIIALKYKDGVIMASDTGASYGSTLRYKSVERIKAVGKHSLIGA 414
Query: 74 TGCWCDTLTLTRLLQARMQMYEH--EHNKSMTTPAVAQMLSTMLYYKR--FFPYYVSNVL 129
+G + D + R L + + +H + S+ V L+ ++Y +R F P + S V+
Sbjct: 415 SGEFSDFQEILRYLD-ELTLSDHMWDDGNSLGPKEVHSYLTRVMYNRRNKFDPLWNSLVI 473
Query: 130 AGLDSDGKG 138
G+ KG
Sbjct: 474 GGVKKGPKG 482
>05_01_0588 +
5278013-5278153,5278641-5278782,5278923-5279019,
5279130-5279199,5279284-5279388,5279531-5279629,
5280062-5280152,5280238-5280311
Length = 272
Score = 42.7 bits (96), Expect = 2e-04
Identities = 37/195 (18%), Positives = 85/195 (43%), Gaps = 11/195 (5%)
Query: 24 YADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTL 83
+ G +IV + D V+GADTR + G + ++ +K+ ++ + G DT +
Sbjct: 34 FLKTGTTIVGLVFQDGVVLGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAV 93
Query: 84 TRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSY 143
T ++ +++Q++ + + +L + L+ + + VL G+D G +++
Sbjct: 94 TDMVSSQLQLHRYATGRESRVVTSLTLLKSHLFSYQGH-VSAALVLGGVDVTGPH-LHTV 151
Query: 144 DPIGHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAE 203
P G F GS + + +++ + L RE+ + L+ +
Sbjct: 152 YPHGSTDTLPFATMGSGSLAAMSVFESKY---------KEGLTREEGIQLVAEAIRGGIF 202
Query: 204 RDIYTGDSIYILIIT 218
D+ +G ++ + +IT
Sbjct: 203 NDLGSGSNVDVCVIT 217
>05_05_0306 -
23977543-23977614,23977709-23977799,23978296-23978361,
23978399-23978479,23979130-23979176,23979408-23979492,
23979570-23979656,23979728-23979801,23980083-23980166,
23980259-23980298,23980386-23980489
Length = 276
Score = 37.5 bits (83), Expect = 0.009
Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 6/126 (4%)
Query: 26 DNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTR 85
DN G++V I D V+G + +L T I ++L + + L G D +
Sbjct: 32 DNSGTVVGIKCKDGIVLGVE-KLVTSKMILKGSNRRLHSVHRHSGLAVAGLAADGRQIVS 90
Query: 86 LLQARMQMYEHEHNKSMTTPAVAQMLSTMLY----YKRFFPYYVSNVLAGLDSDGKGCVY 141
++ YE + + M +A +++ ++ Y P+ +L G D DG +Y
Sbjct: 91 RAKSEAASYEKVYGEPMPVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQ-LY 149
Query: 142 SYDPIG 147
+P G
Sbjct: 150 MIEPSG 155
>02_04_0371 +
22434710-22435102,22435428-22435624,22435707-22435824,
22436458-22436574,22436702-22436803,22437431-22437487,
22437976-22438044,22438423-22438533,22438597-22438791,
22439023-22439121,22439656-22440222,22440344-22440568,
22441036-22441338,22441640-22441707,22441947-22442105,
22442230-22442475,22442549-22442680,22443243-22443351,
22444131-22444283,22444359-22444601,22444695-22444862,
22445013-22445156,22445238-22445699,22446495-22446791,
22446867-22447024,22447139-22447246,22447474-22447732
Length = 1752
Score = 32.7 bits (71), Expect = 0.26
Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 7/107 (6%)
Query: 74 TGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLD 133
T W D L + ++ M++ S+T P VA ++ LY S V+ LD
Sbjct: 737 TSRWSDILMVLNSAVSQEIMFQVHSECSLTEPYVAHVIGEALYGDATMFIGNSMVIRDLD 796
Query: 134 SDGKGCVYSYDPIGHCARHNFR-------AGGSAAAQLQPLLDNQIG 173
GKG + + H+F AG A+ + LL IG
Sbjct: 797 MFGKGWIDHSTNANNAMMHHFPGFLGAPVAGNRGASGIDGLLSTSIG 843
>03_05_0006 +
19527479-19528769,19529693-19530105,19530220-19530430,
19530531-19530768,19530847-19530997,19531240-19531542
Length = 868
Score = 31.9 bits (69), Expect = 0.45
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 36 GDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLLQARMQMYE 95
G D AV R + G + + K + KL ++ GC D RM +YE
Sbjct: 574 GQDIAVKRLSRRSTQGLREFKNEVKLIAKLQHRNLVRLLGCCIDG-------SERMLIYE 626
Query: 96 HEHNKSMTTPAVAQMLSTML-YYKRF 120
+ HN+S+ T + ++L + KRF
Sbjct: 627 YMHNRSLNTFLFNEEKQSILNWSKRF 652
>03_05_0890 -
28547462-28547545,28548451-28548528,28548641-28548814,
28548902-28548958,28549065-28549116,28549907-28549995,
28550259-28550344,28550427-28550637,28551790-28551882,
28551958-28552098,28552175-28552267,28553879-28554113,
28554263-28554435,28555234-28556571,28556668-28556853,
28557625-28557713,28557756-28557905,28557951-28558596
Length = 1324
Score = 31.1 bits (67), Expect = 0.79
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 156 AGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPRE 188
AGG++AA L P+L + +GL N PLP+E
Sbjct: 110 AGGASAAALSPILASSLGL-NRIKTRSGPLPQE 141
>02_04_0055 - 19290975-19292312
Length = 445
Score = 31.1 bits (67), Expect = 0.79
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 125 VSNVLAGL-DSDGKGCVYSYDPIGHCARHNFRAGGSAAA 162
VS AG+ D DG D I +C+ H +R G +AAA
Sbjct: 5 VSEAAAGVEDQDGGVAAAGMDGIQYCSEHPYRPGAAAAA 43
>01_06_0946 + 33220910-33222221,33223373-33223734,33223863-33224073,
33224174-33224411,33224492-33224642,33224733-33224997,
33231775-33231820,33232167-33232815,33232883-33233384,
33235023-33235360,33235466-33235676,33235769-33235992,
33236042-33236115,33236147-33236234,33236316-33236612
Length = 1655
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 36 GDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLLQARMQMYE 95
G + AV R G + + K + KL ++ GC D R+ +YE
Sbjct: 1364 GQEVAVKRLSKRSVQGVVEFKNEVKLIAKLQHRNLVRLLGCCIDD-------DERILLYE 1416
Query: 96 HEHNKSMTT 104
H HNKS+ T
Sbjct: 1417 HMHNKSLDT 1425
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 36 GDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLLQARMQMYE 95
G + AV R G + + K + KL ++ GC D RM +YE
Sbjct: 564 GQEVAVKRLSRRSVQGVVEFKNEVKLIAKLQHRNLVRLLGCCIDD-------DERMLVYE 616
Query: 96 HEHNKSMTT 104
+ HN+S+ T
Sbjct: 617 YMHNQSLDT 625
>02_04_0641 - 24667637-24667753,24670088-24670324
Length = 117
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 7 NFPEYAVPGAKQHRFEPYADNGGSIVAIAGDDYAVIGADTRLSTGF 52
N P A+PGA R + +G I+GD YA +G D+ GF
Sbjct: 56 NTPAAALPGAGPLR---RSKSGTKSAKISGDIYADLGVDSEFEIGF 98
>03_01_0568 -
4192514-4192606,4192694-4192753,4192837-4192932,
4193088-4193170,4193289-4193347,4193463-4193559,
4194151-4194232,4194353-4194447,4194585-4194660
Length = 246
Score = 28.7 bits (61), Expect = 4.2
Identities = 26/145 (17%), Positives = 56/145 (38%), Gaps = 5/145 (3%)
Query: 18 QHRFEPYADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCW 77
++ F+ G + + + G D + ++ +T LF +++ L ATG
Sbjct: 26 EYAFKAVKSAGVTSIGVRGKDSVCVVTQKKVPDKLLDHT-SVTHLFPITKYIGLLATGLT 84
Query: 78 CDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLS--TMLYYKRFF--PYYVSNVLAGLD 133
D +L + + + M +A+ ++ +Y + + P V ++ G D
Sbjct: 85 ADARSLVYQARNEAAEFRFKWGYEMPVDVLAKWIADKAQVYTQHAYMRPLGVVAMVLGYD 144
Query: 134 SDGKGCVYSYDPIGHCARHNFRAGG 158
+ ++ DP GH H + G
Sbjct: 145 EEKNAQLFKCDPAGHFFGHKATSAG 169
>06_01_0387 -
2770387-2770514,2770963-2771063,2771152-2771255,
2771345-2771507,2771550-2771596,2772818-2772946
Length = 223
Score = 27.9 bits (59), Expect = 7.4
Identities = 27/130 (20%), Positives = 57/130 (43%), Gaps = 10/130 (7%)
Query: 92 QMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIGHCAR 151
+++E + + ++ +++L+ +LY R + ++AG D G G +Y D G
Sbjct: 70 RLHELANKRRISIAGASKLLANILYSYRGMGLSIGTMIAGWDEKGPG-LYYVDSEGARLM 128
Query: 152 HNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAERDIYTGDS 211
+ + GS + +LD G + + +P E+A L + A RD +G
Sbjct: 129 GSRFSVGSGSLYAYGILDE--GYRYV-------MPVEEAAELARRAIYQATFRDGASGGC 179
Query: 212 IYILIITASG 221
+ + + +G
Sbjct: 180 VSVYHVGPNG 189
>06_01_0493 -
3536207-3537056,3537603-3537826,3538234-3538503,
3539042-3539146
Length = 482
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 94 YEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYD 144
Y+ H K+ + ++ T YYKR + S + G + G C Y ++
Sbjct: 132 YDSSHGKARPNDTILKLQRTAPYYKRNRAHVCSFYVRGECTRGAECPYRHE 182
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.135 0.395
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,728,112
Number of Sequences: 37544
Number of extensions: 266672
Number of successful extensions: 573
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 552
Number of HSP's gapped (non-prelim): 21
length of query: 232
length of database: 14,793,348
effective HSP length: 80
effective length of query: 152
effective length of database: 11,789,828
effective search space: 1792053856
effective search space used: 1792053856
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)
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