Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000201-TA|BGIBMGA000201-PA|IPR001353|20S proteasome, A
and B subunits
(232 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome bet... 175 3e-44
AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome co... 175 3e-44
U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta... 85 3e-17
AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome be... 64 1e-10
Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical pr... 47 1e-05
Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical pr... 45 5e-05
Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical pr... 35 0.043
Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical pr... 31 0.53
U23528-2|AAK31387.1| 984|Caenorhabditis elegans Calsyntenin/alc... 28 5.0
AY091591-1|AAM00045.1| 984|Caenorhabditis elegans calsyntenin p... 28 5.0
Z68748-10|CAL36500.1| 789|Caenorhabditis elegans Hypothetical p... 28 6.5
Z68748-9|CAL36499.1| 796|Caenorhabditis elegans Hypothetical pr... 28 6.5
AC006730-1|AAK72090.1| 324|Caenorhabditis elegans Serpentine re... 27 8.7
>L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome beta
subunit protein 6 protein.
Length = 258
Score = 175 bits (425), Expect = 3e-44
Identities = 89/219 (40%), Positives = 138/219 (63%), Gaps = 3/219 (1%)
Query: 17 KQHRFEPYADNGGSIVAIAGDDYAVIGADTRLSTG-FSIYTRDQKKLFKLSESTVLGATG 75
++ R+ PY+ GGS AI+G+++A++ +DTR++ +I TRD +K+ L+++ +L +G
Sbjct: 40 ERQRWNPYSMEGGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSG 99
Query: 76 CWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSD 135
+ D L L ++LQ+R+ Y ++ M+ A++LS LYY+RFFPYY +LAG+D
Sbjct: 100 FYGDVLQLKKVLQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEH 159
Query: 136 GKGCVYSYDPIGHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAP-LPREKALALL 194
GKG V+SYDPIG R + A G+A + P LD QIG + E P L ++A++L+
Sbjct: 160 GKGAVFSYDPIGCIERLGYSASGAAEPMIIPFLDCQIGHVTLSEGYERPELTLDRAISLM 219
Query: 195 KDVFISAAERDIYTGDSIYILIITASGIQEEKF-ELRKD 232
KD F AAER+I TGD I+++I A KF LR+D
Sbjct: 220 KDSFRGAAEREISTGDKIHLVIAEAGKPVVVKFLPLRED 258
>AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome
component C5 protein.
Length = 258
Score = 175 bits (425), Expect = 3e-44
Identities = 89/219 (40%), Positives = 138/219 (63%), Gaps = 3/219 (1%)
Query: 17 KQHRFEPYADNGGSIVAIAGDDYAVIGADTRLSTG-FSIYTRDQKKLFKLSESTVLGATG 75
++ R+ PY+ GGS AI+G+++A++ +DTR++ +I TRD +K+ L+++ +L +G
Sbjct: 40 ERQRWNPYSMEGGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSG 99
Query: 76 CWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSD 135
+ D L L ++LQ+R+ Y ++ M+ A++LS LYY+RFFPYY +LAG+D
Sbjct: 100 FYGDVLQLKKVLQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEH 159
Query: 136 GKGCVYSYDPIGHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAP-LPREKALALL 194
GKG V+SYDPIG R + A G+A + P LD QIG + E P L ++A++L+
Sbjct: 160 GKGAVFSYDPIGCIERLGYSASGAAEPMIIPFLDCQIGHVTLSEGYERPELTLDRAISLM 219
Query: 195 KDVFISAAERDIYTGDSIYILIITASGIQEEKF-ELRKD 232
KD F AAER+I TGD I+++I A KF LR+D
Sbjct: 220 KDSFRGAAEREISTGDKIHLVIAEAGKPVVVKFLPLRED 258
>U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta
subunit protein 3 protein.
Length = 204
Score = 85.4 bits (202), Expect = 3e-17
Identities = 57/206 (27%), Positives = 97/206 (47%), Gaps = 10/206 (4%)
Query: 28 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 87
GG++VA+AGD+ I +D R+ + DQKK+ K+++ +G G D T+ +
Sbjct: 8 GGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVLEKI 67
Query: 88 QARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIG 147
R +YE N+++ +++M+S + Y RF Y+ ++AGLD K + D IG
Sbjct: 68 MFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDDTNKPYICCMDTIG 127
Query: 148 -HCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAERDI 206
A +F A G+ L + +N +NM+ P E A + + +S ERD
Sbjct: 128 CVSAPRDFVAVGTGQEYLLGVCEN-FWRENMK-------PDELFEATAQSI-LSCLERDA 178
Query: 207 YTGDSIYILIITASGIQEEKFELRKD 232
+G + IT + + R D
Sbjct: 179 ASGWGAVVYTITKDKVNVSTIKARMD 204
>AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome beta
subunit protein 1 protein.
Length = 239
Score = 63.7 bits (148), Expect = 1e-10
Identities = 52/200 (26%), Positives = 91/200 (45%), Gaps = 10/200 (5%)
Query: 28 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 87
G +++A+ + V+G D+R S G I +R K+ ++++ V+ +G DT + +
Sbjct: 23 GTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSAADTQAIADIA 82
Query: 88 QARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIG 147
+ + +Y NK +T +Q+ LY R S ++AG D + G VY+ G
Sbjct: 83 KYHIDVYTMTENKPVTIYRSSQIFRQFLYNYR-EQLSASVLVAGWDEELGGQVYAIPIGG 141
Query: 148 HCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAERDIY 207
+R A GS + +Q LD+Q L E+ A++K A RD
Sbjct: 142 FVSRQRSTASGSGSTFVQGFLDSQ---------WRPNLTLEECKAIVKQAVGLATFRDGS 192
Query: 208 TGDSIYILIITASGIQEEKF 227
+G + + +I +G Q E F
Sbjct: 193 SGGVVRLAVINKAGSQFELF 212
>Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical
protein C47B2.4 protein.
Length = 277
Score = 47.2 bits (107), Expect = 1e-05
Identities = 45/194 (23%), Positives = 87/194 (44%), Gaps = 13/194 (6%)
Query: 28 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 87
G +IVA+A V+GAD+R + G I + +K+ KL+ES G D +T++L
Sbjct: 46 GTTIVAVAFKGGLVMGADSRATAGNIIADKHCEKVHKLTESIYACGAGTAADLDQVTKML 105
Query: 88 QARMQMYE-HEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPI 146
+++ E + K+ A+ Q + Y+ + Y+ ++ G+D G +Y
Sbjct: 106 SGNLRLLELNTGRKARVITALRQAKQHLFNYQGYIGAYL--LIGGVDPTGPH-LYMCSAN 162
Query: 147 GHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAERDI 206
G F A GS + +L+ + + +++A L++ + D
Sbjct: 163 GTTMAFPFTAQGSGSYAAITILERDF---------KVDMTKDEAEKLVQRALEAGMHGDN 213
Query: 207 YTGDSIYILIITAS 220
+G+S+ ++II S
Sbjct: 214 ASGNSLNLVIIEPS 227
>Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical
protein K05C4.1 protein.
Length = 284
Score = 44.8 bits (101), Expect = 5e-05
Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 1/130 (0%)
Query: 41 VIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLLQARMQMYEHEHNK 100
++ D+R S+G I ++ K+ + + V G D TR++ +YE
Sbjct: 84 IVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELREKT 143
Query: 101 SMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIGHCARHNFRAGGSA 160
S+T A ++ + LY R V +++AG D G ++ D G + + GS
Sbjct: 144 SITVSAASKYFANTLYGYRGQGLSVGSMVAGYDKKGPQ-IFKVDSEGDRCQLKVCSVGSG 202
Query: 161 AAQLQPLLDN 170
+ +LDN
Sbjct: 203 SLNAYGILDN 212
>Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical
protein C36B1.4 protein.
Length = 253
Score = 35.1 bits (77), Expect = 0.043
Identities = 31/155 (20%), Positives = 61/155 (39%), Gaps = 9/155 (5%)
Query: 28 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 87
G + V + G D VIG + + R +K+ + + +L G D L
Sbjct: 30 GSTAVGVRGKDCIVIGVEKKSIPALQD-DRTIRKIHMIDDHVMLAFAGLSADARVLVDRA 88
Query: 88 QARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFF------PYYVSNVLAGLDSDGKGCVY 141
+ Q Y+ +T +++ ++ +RF P+ +S ++ G D DG ++
Sbjct: 89 RIECQSYKLTLEDPVTVAYISRYIANTK--QRFTQSPGRRPFGISMLIGGFDHDGTPRLF 146
Query: 142 SYDPIGHCARHNFRAGGSAAAQLQPLLDNQIGLKN 176
+P G + A G ++ L+ Q +N
Sbjct: 147 KTEPSGAYYEYVANATGRGEKPVREYLEEQYSEEN 181
>Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical
protein ZK945.2 protein.
Length = 250
Score = 31.5 bits (68), Expect = 0.53
Identities = 18/92 (19%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 26 DNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRD-QKKLFKLSESTVLGATGCWCDTLTLT 84
DN G+++AI G + V+ AD +S+ +YT + ++F ++++ + G + D L
Sbjct: 32 DNAGTMIAIRGKNGVVVVADKLISS--KLYTDNANPRMFNVNDNVGVAVAGNYPDGFALK 89
Query: 85 RLLQARMQMYEHEHNKSMTTPAVAQMLSTMLY 116
+ ++ + M +A ++ ++
Sbjct: 90 NYAYGEAMKWLKDYREPMPIQNIANSVAEYIH 121
>U23528-2|AAK31387.1| 984|Caenorhabditis elegans
Calsyntenin/alcadein homolog protein1, isoform a
protein.
Length = 984
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 165 QPLLDNQIGLKNMQNVTEAPLPREKAL 191
+P D Q+G +QN+ E LPR KAL
Sbjct: 808 EPAFD-QLGSSRLQNILEMDLPRPKAL 833
>AY091591-1|AAM00045.1| 984|Caenorhabditis elegans calsyntenin
protein.
Length = 984
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 165 QPLLDNQIGLKNMQNVTEAPLPREKAL 191
+P D Q+G +QN+ E LPR KAL
Sbjct: 808 EPAFD-QLGSSRLQNILEMDLPRPKAL 833
>Z68748-10|CAL36500.1| 789|Caenorhabditis elegans Hypothetical
protein F13H10.4b protein.
Length = 789
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 55 YTRDQKKLFKLSESTVLGATGCW 77
YT+ Q K+ K+S S +LG+ G W
Sbjct: 334 YTKTQLKMAKVSLSNMLGSVGYW 356
>Z68748-9|CAL36499.1| 796|Caenorhabditis elegans Hypothetical
protein F13H10.4a protein.
Length = 796
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 55 YTRDQKKLFKLSESTVLGATGCW 77
YT+ Q K+ K+S S +LG+ G W
Sbjct: 341 YTKTQLKMAKVSLSNMLGSVGYW 363
>AC006730-1|AAK72090.1| 324|Caenorhabditis elegans Serpentine
receptor, class i protein33 protein.
Length = 324
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/56 (19%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 79 DTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDS 134
D + + +Q ++ + N+S V+QML++++++ F ++V +++ +D+
Sbjct: 212 DIFKMLQEVQTKVSSSSFQRNQSAIRSLVSQMLASLMFFVPLF-FFVMLIMSDMDN 266
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.319 0.135 0.395
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,496,869
Number of Sequences: 27539
Number of extensions: 213046
Number of successful extensions: 464
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 449
Number of HSP's gapped (non-prelim): 13
length of query: 232
length of database: 12,573,161
effective HSP length: 79
effective length of query: 153
effective length of database: 10,397,580
effective search space: 1590829740
effective search space used: 1590829740
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)
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