GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000201-TA|BGIBMGA000201-PA|IPR001353|20S proteasome, A
and B subunits
         (232 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.8  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   5.5  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   7.3  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
          protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 6  ENFPEYAVPGAKQHR 20
          EN+P Y + GAKQ +
Sbjct: 80 ENYPHYQMSGAKQKK 94


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 12/38 (31%), Positives = 17/38 (44%)

Query: 150 ARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPR 187
           ARH FR   S    LQ L +    +++   +T  P  R
Sbjct: 270 ARHLFRTASSTPEDLQDLEEPLTTIQHNNCLTRIPSTR 307


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 29  GSIVAIAGDDYAVIGA 44
           G I+A  GD + VIGA
Sbjct: 102 GIIIAYTGDVHGVIGA 117


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,430
Number of Sequences: 429
Number of extensions: 2433
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 232
length of database: 140,377
effective HSP length: 56
effective length of query: 176
effective length of database: 116,353
effective search space: 20478128
effective search space used: 20478128
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)