Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000200-TA|BGIBMGA000200-PA|IPR001841|Zinc finger,
RING-type, IPR003892|Ubiquitin system component Cue
         (622 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    23   4.7  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   4.7  
DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory pro...    23   6.3  
DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory pro...    23   6.3  

>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)

Query: 286 NCAICWEPMKEARKLPCSHLFHNSCVRQWVQQ 317
           +CA C +  K+  K    HL+ N   + W +Q
Sbjct: 73  SCAKCTDKQKQGAKTVIQHLYKNK--QDWWKQ 102


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 40  YVFYKFIFIFGVINVQYMDEVMLWCSWFTLVGFL----HLMGQLCKDRFEYL 87
           Y FY    IF +  + Y   ++L C ++    F+    HL+  +C   F Y+
Sbjct: 213 YYFYSAFIIFTIHLLFYCVLIILLCIYYFYYAFILFTVHLLLLVCIYYFYYM 264


>DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory
           protein 16 protein.
          Length = 126

 Score = 23.0 bits (47), Expect = 6.3
 Identities = 12/32 (37%), Positives = 15/32 (46%)

Query: 277 KEEVEKNQDNCAICWEPMKEARKLPCSHLFHN 308
           K+  E  Q+ CA C E  KE  +    HL  N
Sbjct: 62  KDIPEALQNGCAKCNEKHKEGVRKVIHHLIEN 93


>DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory
           protein 9 protein.
          Length = 126

 Score = 23.0 bits (47), Expect = 6.3
 Identities = 12/32 (37%), Positives = 15/32 (46%)

Query: 277 KEEVEKNQDNCAICWEPMKEARKLPCSHLFHN 308
           K+  E  Q+ CA C E  KE  +    HL  N
Sbjct: 62  KDIPEALQNGCAKCNEKHKEGVRKVIHHLIEN 93


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.326    0.137    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,355
Number of Sequences: 317
Number of extensions: 4073
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 4
length of query: 622
length of database: 114,650
effective HSP length: 61
effective length of query: 561
effective length of database: 95,313
effective search space: 53470593
effective search space used: 53470593
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 46 (22.6 bits)