Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000200-TA|BGIBMGA000200-PA|IPR001841|Zinc finger,
RING-type, IPR003892|Ubiquitin system component Cue
         (622 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    25   2.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    25   2.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    25   2.4  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 67  FTLVGFLHLMGQLCKDRFEYLASSPNTAR 95
           +  VG++    Q+ K+RF+ +A S  TAR
Sbjct: 301 YATVGYMAKRIQMRKNRFQKIAESMKTAR 329


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 67  FTLVGFLHLMGQLCKDRFEYLASSPNTAR 95
           +  VG++    Q+ K+RF+ +A S  TAR
Sbjct: 301 YATVGYMAKRIQMRKNRFQKIAESMKTAR 329


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 67  FTLVGFLHLMGQLCKDRFEYLASSPNTAR 95
           +  VG++    Q+ K+RF+ +A S  TAR
Sbjct: 240 YATVGYMAKRIQMRKNRFQKIAESMKTAR 268


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.137    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,816
Number of Sequences: 429
Number of extensions: 4756
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 3
length of query: 622
length of database: 140,377
effective HSP length: 62
effective length of query: 560
effective length of database: 113,779
effective search space: 63716240
effective search space used: 63716240
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 46 (22.6 bits)