Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000200-TA|BGIBMGA000200-PA|IPR001841|Zinc finger,
RING-type, IPR003892|Ubiquitin system component Cue
(622 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 53 1e-07
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 47 7e-06
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 46 2e-05
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 44 6e-05
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 43 1e-04
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 43 1e-04
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 43 1e-04
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 43 1e-04
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 42 3e-04
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 42 3e-04
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 41 4e-04
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 41 6e-04
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 41 6e-04
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 40 0.001
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 39 0.002
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 39 0.002
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 38 0.003
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 38 0.005
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 37 0.010
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 35 0.039
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 34 0.051
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 34 0.068
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi... 34 0.068
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 32 0.21
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 32 0.21
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 32 0.27
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 31 0.63
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 29 1.5
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 29 2.5
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 28 4.4
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 28 4.4
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 27 7.7
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 52.8 bits (121), Expect = 1e-07
Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 5/49 (10%)
Query: 287 CAICWEPM-----KEARKLPCSHLFHNSCVRQWVQQDASCPTCRRGLAH 330
C IC++ M K+A K+PC H+F +C+++W++ +CP CR+ + H
Sbjct: 107 CPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLCRKEVPH 155
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 47.2 bits (107), Expect = 7e-06
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 278 EEVEKNQDNCAICWEPMK---EARKLPCSHLFHNSCVRQWVQQDASCPTCR 325
+E+ + C IC E K + +LPC H FH +C++ W++ + +C CR
Sbjct: 387 KELIDEEGECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICR 437
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 45.6 bits (103), Expect = 2e-05
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 298 RKLPCSHLFHNSCVRQWVQQDASCPTCRRGL 328
++LPC H+ H C+R W+++ +CP CRR +
Sbjct: 324 KRLPCGHILHFHCLRNWLERQQTCPICRRSV 354
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 44.0 bits (99), Expect = 6e-05
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 270 LHYPMASKEEVEKNQDNCAICWEPMKEARKLPCSHLFHNSCVRQWVQQDASCPTCRRGL 328
LH +E V + + C IC+ + + PC H F C+ Q + Q CPTCR GL
Sbjct: 153 LHMEDLLQENVSRELE-CQICFGMLYDPVVSPCGHTFCGPCLMQALTQSPQCPTCRFGL 210
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 43.2 bits (97), Expect = 1e-04
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 278 EEVEKNQDNCAICWEPMKEARKLPCSHLFHNSCVRQWVQQDASCPTCRRGL 328
++++K + C IC E ++ C H + C+ W+++ SCPTCR+ L
Sbjct: 77 QKIKKTLE-CPICTEALQRPFTTHCGHTYCYECLLNWLKESKSCPTCRQKL 126
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 42.7 bits (96), Expect = 1e-04
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 15/72 (20%)
Query: 273 PMASKEEVEK---------NQDNCAIC---WEPMKEARKLP-CSHLFHNSCVRQWV-QQD 318
P+AS++++EK + C +C +E E R+L C+H FH C+ QW+
Sbjct: 502 PVASQKDLEKAGGVFPFSGTDERCLVCLSNFELNDECRRLKQCNHFFHRECIDQWLTSSQ 561
Query: 319 ASCPTCR-RGLA 329
SCP CR +G+A
Sbjct: 562 NSCPLCRTKGVA 573
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 42.7 bits (96), Expect = 1e-04
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 280 VEKNQDNCAICWEPMKE---ARKLPCSHLFHNSCVRQWV-QQDASCPTC 324
+E +D C IC+ R LPC H+FH C+ W+ ASCP C
Sbjct: 198 LEDEEDFCIICYADYAFDDILRVLPCEHVFHTQCIDTWMTTMKASCPLC 246
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 42.7 bits (96), Expect = 1e-04
Identities = 23/52 (44%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
Query: 285 DNCAICWEPMKEA---RKLP-CSHLFHNSCVRQWVQQ-DASCPTCRRGLAHG 331
D+C IC E RKL C H FH +C+ QW+ + SCP CR AHG
Sbjct: 764 DSCLICLETYTNGDICRKLQACKHFFHQACIDQWLTTGNNSCPLCR---AHG 812
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 41.9 bits (94), Expect = 3e-04
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 299 KLPCSHLFHNSCVRQWVQQDASCPTCR 325
K+PC H FHN C+ W + +CP CR
Sbjct: 53 KIPCGHYFHNHCLESWCRVANTCPLCR 79
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 41.5 bits (93), Expect = 3e-04
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 280 VEKNQD-NCAICWEPMKEARK----LPCSHLFHNSCVRQWVQQDASCPTC 324
+E++ D NC IC E M +R+ L CSH H C ++++ + CPTC
Sbjct: 263 IERSTDCNCPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRTNYRCPTC 312
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 41.1 bits (92), Expect = 4e-04
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 287 CAICWEPMKEARK---LPCSHLFHNSCVRQW-VQQDASCPTC 324
C IC E + K LPC H FH C+ +W V +CPTC
Sbjct: 321 CVICLESFTKGDKVVALPCKHEFHRPCIAKWIVDYRHACPTC 362
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 40.7 bits (91), Expect = 6e-04
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 301 PCSHLFHNSCVRQWVQQDASCPTCR 325
PC HL+H C+ QW++ + CP CR
Sbjct: 646 PCHHLYHRQCLLQWMETRSICPVCR 670
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 40.7 bits (91), Expect = 6e-04
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 287 CAICWEPMKEARKLPCSHLFHNSCVRQWVQQDASCPTCRRGL 328
C IC + +K+ C HL+ + C+ W++ +SCP C+ L
Sbjct: 1092 CIICRDIIKQGFITTCGHLYCSFCLEAWLKHSSSCPMCKTKL 1133
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Query: 285 DNCAICWEPMKEARKLP------CSHLFHNSCVRQWVQQDAS--CPTCR 325
+ CAIC+ + R LP C H FH SC+ +W + S CP CR
Sbjct: 1556 EECAICYSVLSVERTLPNKRCGTCRHKFHASCLYKWFKSSNSSRCPLCR 1604
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 38.7 bits (86), Expect = 0.002
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 287 CAICWEPMKEARKLPCSHLFHNSCVRQWVQQDASCPTCR 325
C IC E + CSH F + C+R ++++ CP CR
Sbjct: 29 CLICHEYFRAPLITSCSHTFCSFCIRDYLREHPMCPACR 67
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 38.7 bits (86), Expect = 0.002
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 280 VEKNQDNCAICWEPMKEARKLPCSHLFHNSCVRQWVQQDASCPTCR 325
+ + C++C E + C H+F SC+ W + + CP CR
Sbjct: 249 IPEGNRKCSLCMEFIHCPAATECGHIFCWSCINGWTSKKSECPLCR 294
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 38.3 bits (85), Expect = 0.003
Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 5/53 (9%)
Query: 283 NQDNCAICW-EPMKEA---RKLPCSHLFHNSCVRQWVQQDAS-CPTCRRGLAH 330
+Q C IC E +E+ R+LPC H+FH +C+ ++ +++ CP C++ + +
Sbjct: 494 DQRECTICLCEYSEESPLYRELPCHHIFHPACIDPYLLKNSDLCPLCKQSVTN 546
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 37.5 bits (83), Expect = 0.005
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 286 NCAICWEPMK-EARKLPCSH-LFHNSCVRQWVQQDASCPTCRR 326
+C IC + A+ PC H F SC+ +W+ Q +CP C+R
Sbjct: 20 DCVICLQKDGLRAQLSPCGHDQFDYSCICRWMDQSLTCPICKR 62
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 36.7 bits (81), Expect = 0.010
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 269 PLHYPMASKEEVEKNQDNCAICWEPMKEARK----LPCSHLFHNSCVRQWVQQDASCPTC 324
P P AS C +C E M + + C H FH C+++W ++SCP C
Sbjct: 190 PSSKPFASTTPALIELPTCVVCLERMDSSITGLITIVCQHTFHCPCLQKW--GNSSCPVC 247
Query: 325 R 325
R
Sbjct: 248 R 248
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 34.7 bits (76), Expect = 0.039
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 287 CAICWEPMKEARKLPCSHLFHNSCVRQWVQQDAS---CPTCRR 326
C IC + + PC H+F N C+ + A+ CP CRR
Sbjct: 206 CVICLDSPENLSCTPCGHIFCNFCILSALGTTAATQKCPVCRR 248
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 34.3 bits (75), Expect = 0.051
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 261 RHRHLSTSPLHYPMASKEEVE-KNQDN--CAICWEPMKEARKLPCSHLFHNSCVRQWVQ- 316
R R ++ P + ++ V+ +NQ+N C IC E ++A + C H F CV +++
Sbjct: 682 RMRQMADHPDLVLASKRKTVDIENQENIVCKICDEVAQDAIESRCHHTFCRLCVTEYINA 741
Query: 317 ----QDASCPTC 324
++ +CP+C
Sbjct: 742 AGDGENVNCPSC 753
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 33.9 bits (74), Expect = 0.068
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 12/85 (14%)
Query: 253 RGPHESQVRHRHLSTSPLHYPMASKEEVEKNQDNCAICWEPMKEARKL----PCSHLFHN 308
R P S+ + L S L E++ C++C + + + + C H+FH
Sbjct: 163 RMPKNSKEIKKGLDLSKLDMTSRMIVELKNRLYECSVCTDTINPSTSIWSCGTCYHVFHL 222
Query: 309 SCVRQWVQ-------QDA-SCPTCR 325
SC+R+W + +DA CP C+
Sbjct: 223 SCIRKWCKNSIEQRNEDAWRCPYCQ 247
>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
Dma1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 33.9 bits (74), Expect = 0.068
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 281 EKNQDNCAICWEPMKEARKL---PCSHLFHNSCVRQWVQQD---ASCPTCRR 326
E C IC P+ + L PCSH +H C+R + + SC CR+
Sbjct: 186 ESGPPECCICLMPVLPCQALFVAPCSHSYHYKCIRPTLNESHPYFSCFICRK 237
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 32.3 bits (70), Expect = 0.21
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 18/83 (21%)
Query: 260 VRHRHLSTSPLHYPMASK-----EEVEKNQDN---------CAICWEPMKEARKLP--CS 303
+++ H S+ L + M +K E+ EK ++N C C P++ P C
Sbjct: 748 LKYIHSSSRDLIFEMENKKATGNEQSEKGKENAKTVTSLKKCVYCELPLRGVLVYPPVCG 807
Query: 304 HLFHNSCVRQWV--QQDASCPTC 324
H+ H SC+R W D + P C
Sbjct: 808 HIGHESCLRSWYFDNTDDALPVC 830
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 32.3 bits (70), Expect = 0.21
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 275 ASKEEVEKNQDNCAICWEPMKEARKLPCSHLFHNSC 310
ASKEE ++++ C IC E + + LPC+H + C
Sbjct: 69 ASKEEQDEDEQICFICAEGITYSCVLPCNHRMCHVC 104
>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 31.9 bits (69), Expect = 0.27
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 256 HESQVRHRHLSTSPLHYPMASKEEVEKNQDNCAICWEPMKEARKLPCSHLFHNSCVRQWV 315
+ES ++ ++ + L P E D C IC E +K L +F C++ W+
Sbjct: 226 YESHLKKGEVAFTELAPPKLPFEINVSTTDICKICGEKIKNPAVLSTGFVFCYPCIQVWL 285
Query: 316 QQDA-SCP 322
Q+ CP
Sbjct: 286 QRHPFKCP 293
>SPAC343.03 |apc11||anaphase-promoting complex subunit
Apc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 30.7 bits (66), Expect = 0.63
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 8/40 (20%)
Query: 285 DNCAICWEPMKEARKLPCSHLFHNSCVRQWVQQDASCPTC 324
DNC I W C H+FH C++ W+ S C
Sbjct: 43 DNCPIVWGK--------CKHIFHAHCIQNWLATSGSQGQC 74
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 287 CAICWEPMKEARKLPCSHLFHNSCVRQWVQQDAS-CPTCR 325
CAIC + +L CSH+F C+ +Q CP CR
Sbjct: 360 CAICSNVAYKPVRLGCSHVFCLHCLIILQKQKVDFCPLCR 399
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 28.7 bits (61), Expect = 2.5
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 302 CSHLFHNSCVRQWVQQDASCPTCRR 326
C+H FH C+ +W+ CP R
Sbjct: 74 CNHAFHFHCISRWLNTRNVCPLDNR 98
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 287 CAICWEPM----KEARKLPCSHLFHNSCVRQWVQQDAS-CP 322
C IC+E + AR C +FH C R W+ A+ CP
Sbjct: 230 CIICFEEFAAGDRVARIEYCLCIFHLKCYRDWLSTGAAGCP 270
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 31 QRVKDKFWNYVFY--KFIFIFGVINVQYMDEVMLWCSWFTLV 70
+R+K +FW ++ K ++ GV+N +Y D +L S F V
Sbjct: 192 KRLKHRFWTELYQGAKLFYLSGVLNGRYPDREILNLSRFISV 233
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 274 MASKEEVEKNQDNCAICWEPM-KEARKL-PCSHLFHNSCVRQWVQQDAS 320
M ++ V + ++C C +P+ E L PC H FH SC+ + + AS
Sbjct: 824 MRNRYIVLEPNESCWHCNQPLFSEPFVLFPCQHAFHRSCMLEKTYKLAS 872
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.326 0.137 0.441
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,200,130
Number of Sequences: 5004
Number of extensions: 73402
Number of successful extensions: 218
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 189
Number of HSP's gapped (non-prelim): 37
length of query: 622
length of database: 2,362,478
effective HSP length: 77
effective length of query: 545
effective length of database: 1,977,170
effective search space: 1077557650
effective search space used: 1077557650
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 57 (27.1 bits)
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