GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000200-TA|BGIBMGA000200-PA|IPR001841|Zinc finger,
RING-type, IPR003892|Ubiquitin system component Cue
         (622 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking p...    26   2.6  
AJ439060-8|CAD27759.1|  808|Anopheles gambiae putative V-ATPase ...    25   4.5  
DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protei...    25   7.9  
DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protei...    25   7.9  

>AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking
           protein.
          Length = 932

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 12/118 (10%)

Query: 261 RHRHLSTSPLHYPMASKEEVEKNQDNCAICWEPMKEARKLPCSHLFHNSCVRQWVQQDAS 320
           R++   T P H+      ++ +  D C  CW+   EAR           CV++ +Q+ A 
Sbjct: 499 RNKARPTFPAHFGTGLVTQIVR--DTCEDCWDHDAEAR-------LTAMCVQERLQEVAQ 549

Query: 321 C-PTCRRGLAHGAXXXXXXXXXHNHLFHF--DGTTVSGHFIPVKYYINSTIAYWDEKN 375
             P  R     G             L+    DGT ++      +Y  + TIA+    N
Sbjct: 550 INPRARTMPPKGCSHDDGPALEKAQLYQLESDGTAIAAMMGHQRYSPDGTIAFMTPPN 607


>AJ439060-8|CAD27759.1|  808|Anopheles gambiae putative V-ATPase
           protein.
          Length = 808

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 41  VFYKFIFIFGVINVQYMDEVMLW 63
           V Y  +F  G+ N  Y+  +M+W
Sbjct: 725 VLYNMVFTIGLRNDSYVGAIMIW 747


>DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 9/38 (23%), Positives = 14/38 (36%)

Query: 287 CAICWEPMKEARKLPCSHLFHNSCVRQWVQQDASCPTC 324
           C +C E   +     C H F   C     ++ + C  C
Sbjct: 247 CYVCRESFVDPIVTKCKHYFCERCALAQYKKSSRCAIC 284


>DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 9/38 (23%), Positives = 14/38 (36%)

Query: 287 CAICWEPMKEARKLPCSHLFHNSCVRQWVQQDASCPTC 324
           C +C E   +     C H F   C     ++ + C  C
Sbjct: 247 CYVCRESFVDPIVTKCKHYFCERCALAQYKKSSRCAIC 284


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.326    0.137    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 518,135
Number of Sequences: 2123
Number of extensions: 17427
Number of successful extensions: 50
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 47
Number of HSP's gapped (non-prelim): 4
length of query: 622
length of database: 516,269
effective HSP length: 68
effective length of query: 554
effective length of database: 371,905
effective search space: 206035370
effective search space used: 206035370
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 51 (24.6 bits)