Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000199-TA|BGIBMGA000199-PA|undefined
         (114 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   1.7  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    25   2.2  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    25   2.2  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    24   5.2  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    23   9.0  
SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces...    23   9.0  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    23   9.0  
SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine 5',5'''-p1,p6-hexapho...    23   9.0  

>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 198

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 11/20 (55%), Positives = 15/20 (75%)

Query: 45  ITLQRQEALAEPDGEAQLVD 64
           ITLQ+Q+ LAE D E ++ D
Sbjct: 113 ITLQQQQLLAEKDEENEIAD 132


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 9/25 (36%), Positives = 19/25 (76%)

Query: 72  LNLNATRNLNERMVVIITFMMQEPL 96
           +NL ++RN+++R+  ++ F+  EPL
Sbjct: 585 VNLASSRNVSDRVKCMVNFLGTEPL 609


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 33  TIVTSDPNWRANITLQRQEALAEPDGEAQLVDQ 65
           T ++  PN R NITL R++   EP   A +V Q
Sbjct: 759 THLSRHPNVRENITLVRRDKDEEPTLVAYIVPQ 791


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
            Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 11/40 (27%), Positives = 24/40 (60%)

Query: 33   TIVTSDPNWRANITLQRQEALAEPDGEAQLVDQAEVMPAL 72
            TI+ S    +  I L  +E+ ++PD  ++ + +++ +PAL
Sbjct: 1017 TIINSVLAGKRRIILDVKESSSKPDTSSRSLSRSKTLPAL 1056


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 63  VDQAEVMPALNLNATRNLNERMVVIITFMMQEPLCMWVVIKCLVEK 108
           ++  E+M A+ L   R LN+  +V   F+  EP    + +K  V+K
Sbjct: 80  LESRELM-AICLKKLRGLNQVRLVDANFIWTEPHSRRIKVKLTVQK 124


>SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 282

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 10/43 (23%), Positives = 23/43 (53%)

Query: 57  DGEAQLVDQAEVMPALNLNATRNLNERMVVIITFMMQEPLCMW 99
           D +  ++D  +++ A    +   L+E+ V++IT    +P  +W
Sbjct: 153 DQDRNILDNQKMLLAFFKASKFLLSEKGVIVITLAETKPYTLW 195


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 4   TLVDRLPLPNLKVYTAGSVLLLSIAVYHATIVTS 37
           T +  +P  N+K+     +L L +A    TIVT+
Sbjct: 85  TNIQLIPENNMKIVVPALILTLFLAALDNTIVTT 118


>SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine
          5',5'''-p1,p6-hexaphosphate hydrolase Aps1
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 22 VLLLSIAVYHATIVTSDPNWRANITLQRQEALAEPDGEAQLV 63
          VLL+S A  H + V     W A+ ++Q Q AL E   E  LV
Sbjct: 57 VLLVSSAKKHPSWVVPKGGWEADESVQ-QAALREGWEEGGLV 97


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.134    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 460,027
Number of Sequences: 5004
Number of extensions: 14184
Number of successful extensions: 36
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 8
length of query: 114
length of database: 2,362,478
effective HSP length: 64
effective length of query: 50
effective length of database: 2,042,222
effective search space: 102111100
effective search space used: 102111100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)