Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000199-TA|BGIBMGA000199-PA|undefined
         (114 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18107| Best HMM Match : DUF270 (HMM E-Value=0.0004)                 29   0.69 
SB_34511| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.7  
SB_5869| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.9  

>SB_18107| Best HMM Match : DUF270 (HMM E-Value=0.0004)
          Length = 595

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%)

Query: 75  NATRNLNERMVVIITFMMQEPLCMWVVIKCLVEKVHTW 112
           NA R      + ++TFM    +  WV++KCL+ +  TW
Sbjct: 429 NALRFYYLYQITLLTFMC---ISCWVILKCLMNQKFTW 463


>SB_34511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2492

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/40 (30%), Positives = 23/40 (57%)

Query: 27  IAVYHATIVTSDPNWRANITLQRQEALAEPDGEAQLVDQA 66
           I ++ +T    + +WRA +  Q +  ++E +GE  +V QA
Sbjct: 920 IPIFGSTSQRPERHWRAVVNEQGEVVMSEGEGERGVVPQA 959


>SB_5869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1017

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 38  DPNWRANITLQRQEALAEPD 57
           +P WR  I  +RQE +AE D
Sbjct: 164 NPTWRLTIVRERQEDMAEAD 183


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.134    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,412,659
Number of Sequences: 59808
Number of extensions: 112003
Number of successful extensions: 176
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 173
Number of HSP's gapped (non-prelim): 3
length of query: 114
length of database: 16,821,457
effective HSP length: 73
effective length of query: 41
effective length of database: 12,455,473
effective search space: 510674393
effective search space used: 510674393
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)